Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1684 73.4 1e-10 seq88 73.4 1e-10 >seq1684 Length=2652 Score = 73.4 bits (80), Expect = 1e-10 Identities = 97/135 (72%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 206 GTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAAC 265 ||||||||| ||| | | ||| |||| ||||||||| | || | |||| Sbjct 1106 GTGAAATGCAATAATACAAAAAAGAATACCAAAGGCGAAGGCATAATACTATATAATAAC 1165 Query 266 TGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGC 325 ||||||| | ||||||| || |||||| ||||||||||||||| |||||| || Sbjct 1166 TGACACTTATAAACGAAAGCTAAGGTAGCAAATAGGATTAGATACCCTAGTAGTCTTAGC 1225 Query 326 CGTAAACGATGAATA 340 |||||| ||||||| Sbjct 1226 TGTAAACTATGAATA 1240 >seq88 Length=8487 Score = 73.4 bits (80), Expect = 1e-10 Identities = 97/135 (72%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 206 GTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAAC 265 ||||||||| ||| | | ||| |||| ||||||||| | || | |||| Sbjct 4369 GTGAAATGCAATAATACAAAAAAGAATACCAAAGGCGAAGGCATAATACTATATAATAAC 4428 Query 266 TGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGC 325 ||||||| | ||||||| || |||||| ||||||||||||||| |||||| || Sbjct 4429 TGACACTTATAAACGAAAGCTAAGGTAGCAAATAGGATTAGATACCCTAGTAGTCTTAGC 4488 Query 326 CGTAAACGATGAATA 340 |||||| ||||||| Sbjct 4489 TGTAAACTATGAATA 4503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203071377920