Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq2685 118 4e-24 seq88 118 4e-24 seq262 89.7 2e-15 >seq2685 Length=1823 Score = 118 bits (130), Expect = 4e-24 Identities = 88/103 (85%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428 || |||||||| ||||||||| | ||| |||||||||||||||||||||||||||| Sbjct 641 TTAAGACAGCATTTAAGTCGTTACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAA 582 Query 429 TTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACT 471 |||||||||||| ||| ||||||| ||| |||||||||||| Sbjct 581 TTTCGCTACCTTTGGACCGTTATAGATACAGCCGCCGTTTACT 539 >seq88 Length=8487 Score = 118 bits (130), Expect = 4e-24 Identities = 88/103 (85%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428 || |||||||| ||||||||| | ||| |||||||||||||||||||||||||||| Sbjct 1256 TTAAGACAGCATTTAAGTCGTTACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAA 1315 Query 429 TTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACT 471 |||||||||||| ||| ||||||| ||| |||||||||||| Sbjct 1316 TTTCGCTACCTTTGGACCGTTATAGATACAGCCGCCGTTTACT 1358 >seq262 Length=6349 Score = 89.7 bits (98), Expect = 2e-15 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 380 GGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 439 ||| ||||||||| || ||| |||||| |||| |||||||||||||||||| ||||||| Sbjct 5655 GGGAAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCT 5596 Query 440 TAGGATGGTTATAG-TTACCACCGCCGTTTA 469 ||||| ||| ||| ||| |||||||||| Sbjct 5595 TAGGACCGTT-TAGAATACAGCCGCCGTTTA 5566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702218013440