Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq5 111 2e-22 seq320 95.1 2e-17 >seq5 Length=858870 Score = 111 bits (122), Expect = 2e-22 Identities = 101/124 (81%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 715905 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 715848 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || | ||||||| |||||||||||||||| ||| | | |||||| Sbjct 715847 CTCGTTCAAGATTAATAGTTGCAATAATCTATCCCCATCACGATATGTATTGATAAAGAT 715788 Query 119 TACC 122 |||| Sbjct 715787 TACC 715784 Score = 95.1 bits (104), Expect = 2e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | ||||||||||| ||||||| ||| || | |||||||| ||||||||| Sbjct 715704 ACTCGTTTTACATATCAGTGTAGCACGCGTGCAGCCTAGTATATCTAAGGACATCACAGA 715645 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 715644 CCTGTTGTTGCCTTAAACTTCCTTG 715620 >seq320 Length=689 Score = 95.1 bits (104), Expect = 2e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | ||||||||||| ||||||| ||| || | |||||||| ||||||||| Sbjct 1 ACTCGTTTTACATATCAGTGTAGCACGCGTGCAGCCTAGTATATCTAAGGACATCACAGA 60 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 61 CCTGTTGTTGCCTTAAACTTCCTTG 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751996765460