Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq306 87.8 3e-15 seq5 87.8 3e-15 >seq306 Length=1002 Score = 87.8 bits (96), Expect = 3e-15 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 190 TTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| ||| | || || | ||||||| || ||||||||||||||| ||||| Sbjct 705 TTAATAGGAGTAGATTGGAGGCATTTGTATTCAGATGCTAGAGGTGAAATTCTTAGATTT 764 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || |||| ||| ||||||||||| || || | || || ||||||||| |||||| Sbjct 765 TCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAACGA 823 Query 309 AAGTTAGGGG 318 |||||| ||| Sbjct 824 AAGTTAAGGG 833 >seq5 Length=858870 Score = 87.8 bits (96), Expect = 3e-15 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 190 TTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| ||| | || || | ||||||| || ||||||||||||||| ||||| Sbjct 714908 TTAATAGGAGTAGATTGGAGGCATTTGTATTCAGATGCTAGAGGTGAAATTCTTAGATTT 714967 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || |||| ||| ||||||||||| || || | || || ||||||||| |||||| Sbjct 714968 TCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAACGA 715026 Query 309 AAGTTAGGGG 318 |||||| ||| Sbjct 715027 AAGTTAAGGG 715036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915195936512