Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq129 102 3e-19 seq67 100 1e-18 seq5 93.3 2e-16 seq66 77.0 1e-11 seq55 77.0 1e-11 >seq129 Length=1944 Score = 102 bits (112), Expect = 3e-19 Identities = 122/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 36 CGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGG-GAGGTAAATTTCTTCTAAAGC 94 || ||||||| ||| |||| || || ||| | || | | | | || ||||| |||||| Sbjct 1099 CGTCGAGTCGTGTTCTTTGAGATTGGAGCACAAATTCGTGTGATACATTTCACATAAAGC 1158 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACT 153 |||||||| | |||||||||||| ||||||| |||| ||||||||||| || ||| Sbjct 1159 TAAATATTTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACT 1218 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||| ||| ||||| || || |||||| ||| | | |||| Sbjct 1219 CAGGAATGAGGCTTAAATAGTACCTGAAATCGTTAAGATGGAA 1261 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||| ||| |||| |||||||| || ||||||| || ||| || ||| Sbjct 1704 TTGAGTATGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGATGAGATTGA 1763 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||| | ||| | | | ||| ||||||||||| || | | Sbjct 1764 AGTCAGACGAAAGTCTGATGGAAGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 1823 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 1824 ATCACGTTTAGGGGCGA 1840 >seq67 Length=3354 Score = 100 bits (110), Expect = 1e-18 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||| | ||| |||| || || ||| | || ||| | | || ||||| |||||||||| Sbjct 1293 GAGTAGTGTTCTTTGAGATTGGAGCACAAATATGTGTGATAGATTTCACATAAAGCTAAA 1234 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | ||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 1233 TATTTGTAGGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 1174 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || |||| ||||| || || |||||| ||| | | |||| Sbjct 1173 AATGAGATTTAAATAGTACCTGAAATCGTTAAGATGGAA 1135 >seq5 Length=858870 Score = 93.3 bits (102), Expect = 2e-16 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||| | ||| |||| || || ||| | || ||| | | || ||||| |||||||||| Sbjct 718785 GAGTTGTGTTCTTTGAGATTGGAGCACGAATATGTGTGATACATTTCACATAAAGCTAAA 718844 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | || |||||||| ||||||| |||| ||||||||||| ||||||| || Sbjct 718845 TATTTGTAGGAAACCGATAGTAAACAAGTACCGTGAGGGAAAGATGAAATAGCACTTAGG 718904 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 || ||| ||||| | || |||||| ||| Sbjct 718905 AATGAGGTTTAAACAATACCTGAAATCGTT 718934 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||| ||| |||| |||||||| || ||||||| || || || ||| Sbjct 719436 TTGAGTATGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGGTGAGATTGA 719495 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 719496 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 719555 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 719556 ATCACGTTTAGGGGCGA 719572 >seq66 Length=3246 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||| ||| |||| |||||||| || ||||||| || || || ||| Sbjct 3040 TTGAGTATGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGGTGAGATTGA 2981 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 2980 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 2921 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 2920 ATCACGTTTAGGGGCGA 2904 >seq55 Length=624 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||| ||| |||| |||||||| || ||||||| || ||| || ||| Sbjct 581 TTGAGTATGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGATGAGATTGA 522 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||| | ||| | | | ||| ||||||||||| || | | Sbjct 521 AGTCAGACGAAAGTCTGATGGAAGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 462 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 461 ATCACGTTTAGGGGCGA 445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079990476200