Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq320 158 2e-36 seq5 156 7e-36 >seq320 Length=689 Score = 158 bits (174), Expect = 2e-36 Identities = 107/119 (90%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCAC 199 |||| ||||||||||||| |||||||||||||||||||||||||||||||||| | ||| Sbjct 266 GCTAATTAGCAGGTTAAGATCTCGTTCGTTATCGGAATTAACCAGACAAATCATATTCAC 325 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||||||||| ||||| ||| |||||||||||||||||||||||||| Sbjct 326 GAACTAAAAACGGCCATGCATCACCATCCAAGAAATCAAGAAAGAGCTATCAATCTGTC 384 Score = 96.9 bits (106), Expect = 6e-18 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| ||||||| ||| || | |||||||| ||||||||||||||| |||||| Sbjct 15 TCAGTGTAGCACGCGTGCAGCCTAGTATATCTAAGGACATCACAGACCTGTTGTTGCCTT 74 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 |||||||| | | | || | || || |||||||||||| Sbjct 75 AAACTTCCTTGTGTTAGACACACATCGTTCCTCTAAGAAGC 115 >seq5 Length=858870 Score = 156 bits (172), Expect = 7e-36 Identities = 106/118 (90%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCACC 200 ||| ||||||||||||| |||||||||||||||||||||||||||||||||| | ||| Sbjct 715434 CTAATTAGCAGGTTAAGATCTCGTTCGTTATCGGAATTAACCAGACAAATCATATTCACG 715375 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||||||||| ||||| ||| |||||||||||||||||||||||||| Sbjct 715374 AACTAAAAACGGCCATGCATCACCATCCAAGAAATCAAGAAAGAGCTATCAATCTGTC 715317 Score = 87.8 bits (96), Expect = 3e-15 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| ||||||| ||| || | |||||||| ||||||||||||||| |||||| Sbjct 715690 TCAGTGTAGCACGCGTGCAGCCTAGTATATCTAAGGACATCACAGACCTGTTGTTGCCTT 715631 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 |||||||| | | | | | || || |||||||| ||| Sbjct 715630 AAACTTCCTTGCGTTAGGCACACATCGTTCCTCTAAGCAGC 715590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796796572764