Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq5 107 4e-21 seq320 93.3 8e-17 >seq5 Length=858870 Score = 107 bits (118), Expect = 4e-21 Identities = 97/121 (80%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 209 GGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAA 267 ||||||||| | || | | ||||| |||||||||| ||||||| |||| |||| || Sbjct 715784 GGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAACTATTAATCTTGAA 715843 Query 268 CGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 ||||||||||||||||||| | ||||||| | | ||| |||||||||||||||||| Sbjct 715844 CGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGT 715903 Query 328 A 328 | Sbjct 715904 A 715904 Score = 87.8 bits (96), Expect = 3e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 |||||||| |||||| ||||||||||||||| |||||||| | || ||| ||||||| || Sbjct 715623 GGAAGTTTAAGGCAACAACAGGTCTGTGATGTCCTTAGATATACTAGGCTGCACGCGTGC 715682 Query 163 TACACTGA 170 |||||||| Sbjct 715683 TACACTGA 715690 >seq320 Length=689 Score = 93.3 bits (102), Expect = 8e-17 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 115 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 56 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| |||||||| | || ||| ||||||| |||||||||| Sbjct 55 GATGTCCTTAGATATACTAGGCTGCACGCGTGCTACACTGA 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947195794432