Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq54 462 7e-128 seq66 446 5e-123 seq5 307 3e-81 >seq54 Length=10182 Score = 462 bits (512), Expect = 7e-128 Identities = 320/365 (88%), Gaps = 13/365 (4%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-------------C 234 ||||||||| ||| ||| |||||||||||||||| ||| ||| | Sbjct 8865 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGCAAAAATATATTTCAATCTC 8924 Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 |||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 8925 TGCTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTC 8984 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 8985 AACAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 9044 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9045 AGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 9104 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 9105 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTT 9164 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 | ||||||||| ||| |||||||||| ||||||||||||||||||||||| || || | Sbjct 9165 GATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATAC 9224 Query 535 CACTT 539 || || Sbjct 9225 CATTT 9229 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 8647 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 8706 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 8707 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 8753 >seq66 Length=3246 Score = 446 bits (494), Expect = 5e-123 Identities = 320/370 (86%), Gaps = 15/370 (4%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-------------- 233 ||||||||| ||| ||| |||||||||||||| | || |||| Sbjct 1019 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCATTGACGTAGAAAATATATTTCAATCT 1078 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 | ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| ||||| Sbjct 1079 CTACTCCCACTTATACTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCT 1138 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1139 CAACAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 1198 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 TAGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 1258 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1259 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCT 1318 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | ||||||||| ||| |||||||||| ||||||||||||||||||| ||| || || | Sbjct 1319 TCATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACTTTGTGTTAATA 1378 Query 534 TCACTTTCTG 543 || |||||| Sbjct 1379 CCA-TTTCTG 1387 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 791 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 850 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 851 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 897 >seq5 Length=858870 Score = 307 bits (340), Expect = 3e-81 Identities = 256/307 (83%), Gaps = 11/307 (4%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||| ||| Sbjct 721417 CTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCACAA 721358 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 721357 CAGGGTCTTCTTTCCCCGCTGATTTTACCAAGCCCGTTCCCTTGGTTGTGGTTTCGCTAG 721298 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||| | |||||||||||||||||||||||||| | |||| ||||| ||||| ||| Sbjct 721297 ATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCTA-TCAT-TACGTCA-TAATTCCATG 721241 Query 417 --ACGAGGCATTTGGCTACCTTAAGAGAG--TCATAGTTACTCCCGCCGTTTACCCGCGC 472 || | |||| || |||||||||| | | ||||||||||||||||||| | || Sbjct 721240 ACACAATGCAT----CTTGCTTAAGAGAGTTTTTTTGTTACTCCCGCCGTTTACCTGTGC 721185 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 || ||||||||| ||| ||| |||||| ||||||||||||||||||||||| || || Sbjct 721184 TTAATTGAATTTCATCAAGTTGGCATTCAAAGCACTGGGCAGAAATCACATTGTGTTAAT 721125 Query 533 ATCACTT 539 | || || Sbjct 721124 ACCATTT 721118 Score = 95.1 bits (104), Expect = 4e-17 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| || | |||| Sbjct 721703 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTACATTATT 721644 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||| || || ||||||||||||||| | ||||| Sbjct 721643 GTTTAACAGATGTACCG-CCTAGTCAAACTCCCCACCTGGCCATGTC 721598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635192739712