Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F900095605.1_2020 16-11-23] 444 sequences; 18,919,436 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq5 251 2e-64 seq6 215 2e-53 seq319 136 1e-29 >seq5 Length=858870 Score = 251 bits (278), Expect = 2e-64 Identities = 370/512 (72%), Gaps = 30/512 (6%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 714513 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 714454 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 714453 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 714394 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||| Sbjct 714393 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCGTCAAAGCCATGTTAGGT 714334 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA-----ACCATCGCCGG 238 || || |||| |||| |||| ||||||| |||||| | || ||| || | || | Sbjct 714333 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGATACACACTAACGATTG 714274 Query 239 CTCAAGGCCATGCGA-TTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTT 297 | | || | ||| || ||||| || || | | | | | Sbjct 714273 TT----GTGGTGTAACTTCTTT--GTTATAAT---TCCTTTAATA---TCATTTTTCTTG 714226 Query 298 GGTTTTTTATCTAATAAATAC--ACCCCTTCCGA--AGTCGGGGTTTTTAGCATGTATTA 353 || | ||| | |||| |||| | ||||| ||| | ||||| || |||||| Sbjct 714225 GGGGTCTTAACAAATACATACTGATTTACTCCGAGGAGTAAGTACTTTTA-CAAGTATTA 714167 Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGAT 413 ||| ||| || || ||||||| | || ||| | | |||| || | ||||||| | Sbjct 714166 GCTACAGATTTTCCGTAGTTATCCTTATA-TAA---AATGTCAAGTAGATTATAACTGTT 714111 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGA--TTGCTTATACTTAGACATGCATGGCT 471 |||||||||| ||||||||||| |||| | ||| ||||||| || ||||||||| Sbjct 714110 TTAATGAGCCGTTCGCAGTTTCTGCATATAAAATATGCATATACTTTCACTTGCATGGCT 714051 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCA 503 |||||||||||||||||||||||||||||||| Sbjct 714050 TAATCTTTGAGACAAGCATATGACTACTGGCA 714019 >seq6 Length=837512 Score = 215 bits (238), Expect = 2e-53 Identities = 183/224 (82%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 837030 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 836971 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 836970 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 836911 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||| Sbjct 836910 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCGTCAAAGCCATGTTAGGT 836851 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 || || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 836850 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 836807 Score = 136 bits (150), Expect = 1e-29 Identities = 133/167 (80%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 339 TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAA 398 ||||| || ||||||||| ||| || || ||||||| | || ||| | | |||| Sbjct 836696 TTTTA-CAAGTATTAGCTACAGATTTTCCGTAGTTATCCTTATAATAA---AATGTCAAG 836641 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTTATACT 456 || | ||||||| ||||||||||| ||||||||||| ||| | || ||| |||||| Sbjct 836640 TAGATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATTAAATATGCATATACT 836581 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | || ||||||||||||||||||||||||||||||||||||||||| Sbjct 836580 TTCACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 836534 >seq319 Length=35920 Score = 136 bits (150), Expect = 1e-29 Identities = 103/119 (87%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 110 TGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTG 169 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 1 TGGTAGCTATTTCTCAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TC 59 Query 170 ATA-CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| ||||| ||||||| || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 60 ATAGCCATGTTAGGCCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 118 Score = 132 bits (146), Expect = 1e-28 Identities = 128/163 (79%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | || ||| | | |||| || | Sbjct 240 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAATAA---AATGTCAAGTAGA 296 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 297 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 356 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 357 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510393293824