Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq9 114 2e-23 seq5 114 2e-23 >seq9 Length=1345096 Score = 114 bits (126), Expect = 2e-23 Identities = 187/277 (68%), Gaps = 48/277 (17%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 1299377 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 1299434 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT--GAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||||| | | | |||||| Sbjct 1299435 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTATTGATAAAGAT 1299494 Query 119 TACCCGGACCTGTCGGCCAAGGTGA------TAG-------------------------- 146 |||| || | || | ||| | ||| Sbjct 1299495 TACCTACACTTTTCAGTGGAGGAAAAATATATAGCGCGCAGGCATGACCCACGCGCAAAT 1299554 Query 147 ------------ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA 194 ||||||| | | ||||||||||| ||||||| ||| || | |||||| Sbjct 1299555 ATAAATTTAAGAACTCGTTTTACATATCAGTGTAGCACGCGTGCAGCCTAGTATATCTAA 1299614 Query 195 GGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 || ||||||||||||||| |||||| |||||||| || Sbjct 1299615 GGACATCACAGACCTGTTGTTGCCTTAAACTTCCTTG 1299651 >seq5 Length=935796 Score = 114 bits (126), Expect = 2e-23 Identities = 102/124 (82%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 764354 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 764297 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 764296 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTATTGATAAAGAT 764237 Query 119 TACC 122 |||| Sbjct 764236 TACC 764233 Score = 95.1 bits (104), Expect = 2e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | ||||||||||| ||||||| ||| || | |||||||| ||||||||| Sbjct 764153 ACTCGTTTTACATATCAGTGTAGCACGCGTGCAGCCTAGTATATCTAAGGACATCACAGA 764094 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 764093 CCTGTTGTTGCCTTAAACTTCCTTG 764069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999715885