Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq9 122 2e-25 seq6 87.8 3e-15 seq5 87.8 3e-15 >seq9 Length=1345096 Score = 122 bits (134), Expect = 2e-25 Identities = 186/264 (70%), Gaps = 26/264 (10%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-------------GCTCGAATA 121 ||||||||| |||||||||||||||||||| | ||| | | ||||| Sbjct 1300482 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACATTTAAAGCGTTTTCGCGTTTGAATA 1300423 Query 122 CATTAGCATGGAATAATAGAATAGGACGTGCG------GTTCTATTTTGTTGGTTTCTAG 175 | ||||||||||||| | ||| | || | ||||| |||| || ||| | Sbjct 1300422 CTATAGCATGGAATAACAAAATTGAACAAGTCAAATTTGTTCTTTTTTCTTATTTT---G 1300366 Query 176 GACCGCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTG 234 | | || | |||||||||| ||| | ||||| | ||||||| ||||||||||| Sbjct 1300365 G--CTTAGTTACGATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTG 1300308 Query 235 AAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT 294 |||||||| ||||| || |||| ||| ||||||||||| || || | || || ||| Sbjct 1300307 AAATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCAT 1300248 Query 295 TAATCAGTGAACGAAAGTTAGGGG 318 |||||| |||||||||||| ||| Sbjct 1300247 TAATCA-AGAACGAAAGTTAAGGG 1300225 >seq6 Length=916956 Score = 87.8 bits (96), Expect = 3e-15 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 190 TTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| ||| | || || | ||||||| || ||||||||||||||| ||||| Sbjct 916795 TTAATAGGAGTAGATTGGAGGCATTTGTATTCAGATGCTAGAGGTGAAATTCTTAGATTT 916854 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || |||| ||| ||||||||||| || || | || || ||||||||| |||||| Sbjct 916855 TCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAACGA 916913 Query 309 AAGTTAGGGG 318 |||||| ||| Sbjct 916914 AAGTTAAGGG 916923 >seq5 Length=935796 Score = 87.8 bits (96), Expect = 3e-15 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 190 TTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| ||| | || || | ||||||| || ||||||||||||||| ||||| Sbjct 763358 TTAATAGGAGTAGATTGGAGGCATTTGTATTCAGATGCTAGAGGTGAAATTCTTAGATTT 763417 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || |||| ||| ||||||||||| || || | || || ||||||||| |||||| Sbjct 763418 TCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAACGA 763476 Query 309 AAGTTAGGGG 318 |||||| ||| Sbjct 763477 AAGTTAAGGG 763486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915199643072