Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq9 102 3e-19 seq5 93.3 2e-16 >seq9 Length=1345096 Score = 102 bits (112), Expect = 3e-19 Identities = 122/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 36 CGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGG-GAGGTAAATTTCTTCTAAAGC 94 || ||||||| ||| |||| || || ||| | || | | | | || ||||| |||||| Sbjct 1298157 CGTCGAGTCGTGTTCTTTGAGATTGGAGCACAAATTCGTGTGATACATTTCACATAAAGC 1298098 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACT 153 |||||||| | |||||||||||| ||||||| |||| ||||||||||| || ||| Sbjct 1298097 TAAATATTTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACT 1298038 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||| ||| ||||| || || |||||| ||| | | |||| Sbjct 1298037 CAGGAATGAGGCTTAAATAGTACCTGAAATCGTTAAGATGGAA 1297995 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||| ||| |||| |||||||| || ||||||| || ||| || ||| Sbjct 1297552 TTGAGTATGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGATGAGATTGA 1297493 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||| | ||| | | | ||| ||||||||||| || | | Sbjct 1297492 AGTCAGACGAAAGTCTGATGGAAGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 1297433 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 1297432 ATCACGTTTAGGGGCGA 1297416 >seq5 Length=935796 Score = 93.3 bits (102), Expect = 2e-16 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||| | ||| |||| || || ||| | || ||| | | || ||||| |||||||||| Sbjct 767261 GAGTTGTGTTCTTTGAGATTGGAGCACGAATATGTGTGATACATTTCACATAAAGCTAAA 767320 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | || |||||||| ||||||| |||| ||||||||||| ||||||| || Sbjct 767321 TATTTGTAGGAAACCGATAGTAAACAAGTACCGTGAGGGAAAGATGAAATAGCACTTAGG 767380 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 || ||| ||||| | || |||||| ||| Sbjct 767381 AATGAGGTTTAAACAATACCTGAAATCGTT 767410 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||| ||| |||| |||||||| || ||||||| || || || ||| Sbjct 767912 TTGAGTATGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGGTGAGATTGA 767971 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 767972 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 768031 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 768032 ATCACGTTTAGGGGCGA 768048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999163450