Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq39 161 2e-37 seq38 93.3 9e-17 >seq39 Length=29623 Score = 161 bits (178), Expect = 2e-37 Identities = 257/364 (71%), Gaps = 16/364 (4%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||| || | || || |||||| || ||||| Sbjct 25033 GCATCTTCACAGATAATTTTATTTCATTAAGATTTTTTTTAAGACAGCATTTAAGTCGTT 25092 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 25093 ACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTA 25152 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATT----GCTCTAACAG 182 ||| ||| ||||||||||||| ||||| | | | | ||| | ||| | Sbjct 25153 TAGATACAGCCGCCGTTTACTATAGCTTATATATA-TATTATAATTTTAAATTATAA-AT 25210 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 || || || | ||||| |||||| |||| |||||||| |||| ||| ||| Sbjct 25211 ATTATTTTTACATAATAGCACTGGGCAGATGTCAATCTTTATACATCATCTTTCGATTTA 25270 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCA--T 300 ||| | | |||||||||| ||||||||||||| ||| | || | ||| | Sbjct 25271 GCAAAGATTTGTGTTTTTGTTAAACAGTCGCTT----AAATTTTTTG----TTTTCAACT 25322 Query 301 AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGT 360 | | | | | | ||||||||||||||| | | | ||||||||||||||||| || | | Sbjct 25323 AAATAAGTATCTTTTCTCCCTAAGTTACAAGATAAATTTGCCGAGTTCCTTAAAAAAAAT 25382 Query 361 TCTC 364 | || Sbjct 25383 TATC 25386 >seq38 Length=5949 Score = 93.3 bits (102), Expect = 9e-17 Identities = 75/88 (85%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || |||| |||||||||||||||||| |||||||||| Sbjct 5666 AAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAG 5725 Query 119 GACCGTTATAG-TTACGGCCGCCGTTTA 145 ||||||| ||| ||| ||||||||||| Sbjct 5726 GACCGTT-TAGAATACAGCCGCCGTTTA 5752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062399585664