Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5 158 2e-36 seq9 152 8e-35 >seq5 Length=935796 Score = 158 bits (174), Expect = 2e-36 Identities = 107/119 (90%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCAC 199 |||| ||||||||||||| |||||||||||||||||||||||||||||||||| | ||| Sbjct 763885 GCTAATTAGCAGGTTAAGATCTCGTTCGTTATCGGAATTAACCAGACAAATCATATTCAC 763826 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||||||||| ||||| ||| |||||||||||||||||||||||||| Sbjct 763825 GAACTAAAAACGGCCATGCATCACCATCCAAGAAATCAAGAAAGAGCTATCAATCTGTC 763767 Score = 95.1 bits (104), Expect = 2e-17 Identities = 85/104 (82%), Gaps = 6/104 (6%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| ||||||| ||| || | |||||||| ||||||||||||||| |||||| Sbjct 764139 TCAGTGTAGCACGCGTGCAGCCTAGTATATCTAAGGACATCACAGACCTGTTGTTGCCTT 764080 Query 76 AAACTTCCATTGGCTGGAAGCCA---ATAGTCCCTCTAAGAAGC 116 |||||||| ||| || || || || || |||||||||||| Sbjct 764079 AAACTTCC-TTG--TGTTAGGCACACATCGTTCCTCTAAGAAGC 764039 >seq9 Length=1345096 Score = 152 bits (168), Expect = 8e-35 Identities = 106/119 (89%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCAC 199 |||| ||||||||||||| |||||||||||||||||||||||||||||||||| | ||| Sbjct 1299832 GCTAATTAGCAGGTTAAGATCTCGTTCGTTATCGGAATTAACCAGACAAATCATATTCAC 1299891 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||||||||| ||||| ||| ||||||||||||||||| |||||||| Sbjct 1299892 GAACTAAAAACGGCCATGCATCACCATCCAAGAAATCAAGAAAGAGCTATTAATCTGTC 1299950 Score = 96.9 bits (106), Expect = 6e-18 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| ||||||| ||| || | |||||||| ||||||||||||||| |||||| Sbjct 1299581 TCAGTGTAGCACGCGTGCAGCCTAGTATATCTAAGGACATCACAGACCTGTTGTTGCCTT 1299640 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 |||||||| | | | || | || || |||||||||||| Sbjct 1299641 AAACTTCCTTGTGTTAGACACACATCGTTCCTCTAAGAAGC 1299681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796799698959