Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq9 116 7e-24 seq5 111 3e-22 >seq9 Length=1345096 Score = 116 bits (128), Expect = 7e-24 Identities = 203/304 (67%), Gaps = 46/304 (15%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 1299681 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 1299622 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||| |||||||| | || ||| ||||||| |||||||||| | ||||||||| | Sbjct 1299621 GATGTCCTTAGATATACTAGGCTGCACGCGTGCTACACTGATATGTAAAACGAGTTCTTA 1299562 Query 190 ACCTTG------------------GCCGG--------------------------AAGGT 205 | || ||| | || || Sbjct 1299561 AATTTATATTTGCGCGTGGGTCATGCCTGCGCGCTATATATTTTTCCTCCACTGAAAAGT 1299502 Query 206 CTGGGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 | ||||||||| | || | | ||||| |||||||||| |||||||||||| |||| Sbjct 1299501 GTAGGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAATTATTAATCTT 1299442 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 ||||||||||||||||||||| | ||||||| | | ||| ||||||||||||||| Sbjct 1299441 GAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTT 1299382 Query 325 TGTA 328 |||| Sbjct 1299381 TGTA 1299378 >seq5 Length=935796 Score = 111 bits (122), Expect = 3e-22 Identities = 98/121 (81%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 209 GGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAA 267 ||||||||| | || | | ||||| |||||||||| |||||||||||| |||| || Sbjct 764233 GGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAATTATTAATCTTGAA 764292 Query 268 CGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 ||||||||||||||||||| | ||||||| | | ||| |||||||||||||||||| Sbjct 764293 CGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGT 764352 Query 328 A 328 | Sbjct 764353 A 764353 Score = 89.7 bits (98), Expect = 1e-15 Identities = 81/101 (80%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | | | | | |||||||| |||||| ||||||||||| Sbjct 764039 GCTTCTTAGAGGAACGATGTGTGCCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 764098 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| |||||||| | || ||| ||||||| |||||||||| Sbjct 764099 GATGTCCTTAGATATACTAGGCTGCACGCGTGCTACACTGA 764139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199630592