Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq9 462 7e-128 seq29 446 5e-123 seq27 325 1e-86 seq5 307 3e-81 >seq9 Length=1345096 Score = 462 bits (512), Expect = 7e-128 Identities = 320/365 (88%), Gaps = 13/365 (4%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-------------C 234 ||||||||| ||| ||| |||||||||||||||| ||| ||| | Sbjct 1295614 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGCAAAAATATATTTCAATCTC 1295673 Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 |||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 1295674 TGCTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTC 1295733 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1295734 AACAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 1295793 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1295794 AGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 1295853 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1295854 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTT 1295913 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 | ||||||||| ||| |||||||||| ||||||||||||||||||||||| || || | Sbjct 1295914 GATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATAC 1295973 Query 535 CACTT 539 || || Sbjct 1295974 CATTT 1295978 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 1295396 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 1295455 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 1295456 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 1295502 >seq29 Length=91416 Score = 446 bits (494), Expect = 5e-123 Identities = 320/370 (86%), Gaps = 15/370 (4%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-------------- 233 ||||||||| ||| ||| |||||||||||||| | || |||| Sbjct 90700 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCATTGACGTAGAAAATATATTTCAATCT 90759 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 | ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| ||||| Sbjct 90760 CTACTCCCACTTATACTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCT 90819 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 90820 CAACAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 90879 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 90880 TAGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 90939 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 90940 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCT 90999 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | ||||||||| ||| |||||||||| ||||||||||||||||||| ||| || || | Sbjct 91000 TCATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACTTTGTGTTAATA 91059 Query 534 TCACTTTCTG 543 || |||||| Sbjct 91060 CCA-TTTCTG 91068 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 90472 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 90531 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 90532 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 90578 >seq27 Length=25261 Score = 325 bits (360), Expect = 1e-86 Identities = 227/261 (87%), Gaps = 13/261 (5%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-------------C 234 ||||||||| ||| ||| |||||||||||||||| ||| ||| | Sbjct 25001 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGCAAAAATATATTTCAATCTC 25060 Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 |||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 25061 TGCTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTC 25120 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 25121 AACAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 25180 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25181 AGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 25240 Query 415 TGACGAGGCATTTGGCTACCT 435 ||||||||||||||||||||| Sbjct 25241 TGACGAGGCATTTGGCTACCT 25261 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 24783 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 24842 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 24843 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 24889 >seq5 Length=935796 Score = 307 bits (340), Expect = 3e-81 Identities = 256/307 (83%), Gaps = 11/307 (4%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||| ||| Sbjct 769891 CTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCACAA 769832 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 769831 CAGGGTCTTCTTTCCCCGCTGATTTTACCAAGCCCGTTCCCTTGGTTGTGGTTTCGCTAG 769772 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||| | |||||||||||||||||||||||||| | |||| ||||| ||||| ||| Sbjct 769771 ATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCTA-TCAT-TACGTCA-TAATTCCATG 769715 Query 417 --ACGAGGCATTTGGCTACCTTAAGAGAG--TCATAGTTACTCCCGCCGTTTACCCGCGC 472 || | |||| || |||||||||| | | ||||||||||||||||||| | || Sbjct 769714 ACACAATGCAT----CTTGCTTAAGAGAGTTTTTTTGTTACTCCCGCCGTTTACCTGTGC 769659 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 || ||||||||| ||| ||| |||||| ||||||||||||||||||||||| || || Sbjct 769658 TTAATTGAATTTCATCAAGTTGGCATTCAAAGCACTGGGCAGAAATCACATTGTGTTAAT 769599 Query 533 ATCACTT 539 | || || Sbjct 769598 ACCATTT 769592 Score = 95.1 bits (104), Expect = 4e-17 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| || | |||| Sbjct 770177 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTACATTATT 770118 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||| || || ||||||||||||||| | ||||| Sbjct 770117 GTTTAACAGATGTACCG-CCTAGTCAAACTCCCCACCTGGCCATGTC 770072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199362272