Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6 84.2 2e-11 >seq6 Length=916956 Score = 84.2 bits (92), Expect = 2e-11 Identities = 193/291 (66%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||||| |||||||| ||| | || || || | ||| || |||| || || | Sbjct 508318 CATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCACGAGCTCTCAATTCTTCTTT 508259 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 || |||||||| | || || | || ||||| || || | |||||||||||| | || Sbjct 508258 ACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAATGCCATGGTTCAACATA 508199 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 | || || || || | | ||| || |||||||| || || || | || || || Sbjct 508198 TACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCTACATATCTTGCTGTATCATT 508139 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGA 66579 || || | |||||||| || | || || ||| | ||||| || || |||| || Sbjct 508138 AAAAACTCTTAACATCGGGACTAAACCATTTGATATACCATTAGTTCCTCTGATGTAAGA 508079 Query 66580 TCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTT 66630 | | || | ||||| || ||| || ||| ||||| || || || || Sbjct 508078 ATTTTGAGCTCTAATATCTTGTACAGCCACACCTATACCTCCTGCTGTTTT 508028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567811030960