Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq8 109 1e-21 seq10 87.8 3e-15 >seq8 Length=1026601 Score = 109 bits (120), Expect = 1e-21 Identities = 184/263 (70%), Gaps = 20/263 (8%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG---------GCCTTTGCTCG----AATA 121 ||||||||| |||||||||||||||||||| || |||| || |||| Sbjct 908043 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACAGATATAGCATTTGTGCGTTTGAATA 908102 Query 122 CATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-- 179 | |||||||||||| | ||| | || | | ||||||| ||| | | Sbjct 908103 CTACAGCATGGAATAACAAAATTGAACAAGTCAAAATTTTTTGTTCTTTTTTCTTATTTT 908162 Query 180 -GCC--GTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGA 235 || || | |||||||||| ||| | ||||| | ||||||| |||||||||||| Sbjct 908163 GGCTTAGTTACGATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTGA 908222 Query 236 AATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATT 295 ||||||| ||||| || |||| ||| ||||||||||| || || | || || |||| Sbjct 908223 AATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATT 908282 Query 296 AATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||| ||| Sbjct 908283 AATCA-AGAACGAAAGTTAAGGG 908304 >seq10 Length=1594295 Score = 87.8 bits (96), Expect = 3e-15 Identities = 181/265 (68%), Gaps = 22/265 (8%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG---------GCCTTT------GCTCGAA 119 ||||||||| |||||| ||||||||||||| || ||| | | ||| Sbjct 81641 TTACTTTGAGTAAATTAAAGTGTTCAAAGCAAACAGATAAAGCATTTTTGTGCGTTTGAA 81582 Query 120 TACATTAGCATGGAATAATAGAATAGGACGTG-CGGTTCTAT-TTTGTTGGTTTCTAGGA 177 ||| |||||||||||| | ||| | || | | |||| ||| || ||| || Sbjct 81581 TACTACAGCATGGAATAACAAAATTGAACAGGTCAAAACTATGTTTCTTTTTTTTTATTT 81522 Query 178 CCGCCGTAAT---GATTAATAGGGATAGTCGGGGGTG-TCAGTATTCAATTGTCAGAGGT 233 | | || | |||||||||| |||| |||| | ||||||| |||||||||| Sbjct 81521 TTGGCTTAGTTACGATTAATAGGAGTAGTTTGGGGACATTTGTATTCAGATGTCAGAGGT 81462 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 |||||||| ||||| || |||| ||| |||||||| || || | | || || || Sbjct 81461 GAAATTCTAAGATTTTCTGGAGACAAACAACTGCGAAGGCATTTGTCTAAAATACTTCCA 81402 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| |||||||||||| ||| Sbjct 81401 TTAATCA-AGAACGAAAGTTAAGGG 81378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915198553984