Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq10 89.7 2e-15 seq13 87.8 7e-15 seq8 86.0 3e-14 seq1 77.0 1e-11 >seq10 Length=1594295 Score = 89.7 bits (98), Expect = 2e-15 Identities = 114/152 (75%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGG--TAAATTTCTTCTAAAGCTAA 97 |||||| ||| |||| || || ||| | ||||| | | || ||||| ||||||||| Sbjct 72387 GAGTCGTGTTCTTTGAGATTGGAGCAC-AAATGCGTGTGATACATTTCACATAAAGCTAA 72329 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTG 156 |||| | || ||||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 72328 ATATGTGTAGGAAACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAG 72269 Query 157 GAAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 ||| ||| | |||||||| || |||||| ||| Sbjct 72268 GAATGAGCATTTAAAAAGTACCTGAAATCGTT 72237 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||||||| || | |||||||| || ||||||| || || || ||| Sbjct 71660 TTGAGTATGAGCATATTTGGTAGGACCCGAGAGGCTTTGAACTAAGCGTGGTGAGATTGA 71601 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 71600 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 71541 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 71540 ATCACGTTTAGGGGCGA 71524 >seq13 Length=2014888 Score = 87.8 bits (96), Expect = 7e-15 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || || | | || ||||| |||||||||| Sbjct 128918 GAGTCGTGTTCTTTGAGATTGGAGCACAAATGTGTGTGATACATTTCACATAAAGCTAAA 128859 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | |||||||||||| ||||||| |||| ||||||||||| || || || Sbjct 128858 TATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGAGCTCAGG 128799 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 || ||| ||||| || || |||||| ||| Sbjct 128798 AATGAGCATTAAATAGTACCTGAAATCGTT 128769 >seq8 Length=1026601 Score = 86.0 bits (94), Expect = 3e-14 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||||||||||| || | |||||||| || ||||||| || ||| || ||| Sbjct 911163 TTGAGTAAGAGCATATTTGGTAGGACCCGAGAGGCTTTGAACTAAGCGTGACGAGATTGA 911222 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 911223 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 911282 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 911283 GTCACGTTTAGGGGCGA 911299 Score = 84.2 bits (92), Expect = 9e-14 Identities = 118/161 (73%), Gaps = 5/161 (3%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAA--ATTTCTTCTAAAGCTAA 97 |||||| ||| |||| || || ||| | ||||| | | | ||||| ||||||||| Sbjct 910522 GAGTCGTGTTCTTTGAGATTGGAGCAC-AAATGAGTGTGATGCATTTCACATAAAGCTAA 910580 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTG 156 |||| | |||||||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 910581 ATATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAG 910640 Query 157 GAAAGAG-AGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||| ||| ||||| || || |||||| ||| | | |||| Sbjct 910641 GAATGAGCCATTAAATAGTACCTGAAATCGTTAAGATGGAA 910681 >seq1 Length=1008260 Score = 77.0 bits (84), Expect = 1e-11 Identities = 79/101 (78%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 89 TAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA- 147 |||||||||||||| | |||||||||||| ||||||| || | ||||||||||| Sbjct 900099 TAAAGCTAAATATTCGTAGGAGACCGATAGCAAACAAGTACCGTAAGGGAAAGATGAAAT 900158 Query 148 AGCACTTTGGAAAGAGAG-TTAAAAAGCACGTGAAATTGTT 187 || ||| |||| ||| | ||||| || || |||||| ||| Sbjct 900159 AGTACTCAGGAATGAGCGATTAAATAGTACCTGAAATCGTT 900199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079996610900