Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq8 322 8e-86 seq10 282 7e-74 seq13 143 5e-32 seq1 138 2e-30 >seq8 Length=1026601 Score = 322 bits (356), Expect = 8e-86 Identities = 195/206 (95%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 943662 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 943603 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| |||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 943602 TTAGCGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 943543 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 943542 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 943483 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||||| |||||||| Sbjct 943482 CTGTGGTAACTTTTCTGACACCTCTA 943457 Score = 282 bits (312), Expect = 7e-74 Identities = 187/206 (91%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 913691 TCATCAGTAGGGTAAAACTAAC-TGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 913633 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 913632 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 913573 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 913572 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 913513 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 913512 CTGTGGTAACTTTTCAGACACCTCTA 913487 >seq10 Length=1594295 Score = 282 bits (312), Expect = 7e-74 Identities = 187/206 (91%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 69033 TCATCAGTAGGGTAAAACTAACCTGTCTCAC-ACGGTCTAAACCCAGCTCACGTTCCCTA 69091 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 69092 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 69151 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 69152 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 69211 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 69212 CTGTGGTAACTTTTCAGACACCTCTA 69237 >seq13 Length=2014888 Score = 143 bits (158), Expect = 5e-32 Identities = 158/204 (77%), Gaps = 11/204 (5%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAA-CTAACCT--GTCTCATGACGGTCT--AAACCCAGCTCACGTT 85 ||||||||||| ||||| || | |||||||||| | | |||| ||||||||||| Sbjct 125126 TCATCAGTAGGTTAAAAACTGGGCAAAGTCTCATGACTGCCCCGAAACTCAGCTCACGTT 125185 Query 86 CCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGA 145 |||| |||| ||||||||||||| || ||| || |||| | || |||||||||| Sbjct 125186 CCCTGTTAGCGGGTGAACAATCCGACACTTTGGGACTTCTTCGTCCCAATGATAGGAAAT 125245 Query 146 GCCGACAT----CG-AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAG 200 || || || || || ||||||||||| ||||||||| |||||| ||| |||||||| Sbjct 125246 GCTGATATATTACGAAATGATCAAAAAGCTACGTCGCTA-AAACGCTCGGCCGCCACAAG 125304 Query 201 CCAGTTATCCCTGTGGTAACTTTT 224 |||||||||||| | ||||| || Sbjct 125305 CCAGTTATCCCTATTATAACTCTT 125328 >seq1 Length=1008260 Score = 138 bits (152), Expect = 2e-30 Identities = 143/183 (78%), Gaps = 7/183 (4%) Strand=Plus/Minus Query 51 ACCTGTCTCATGACGGTCT---AAACCCAG-CTCACGTTCCCTATTAGTGG-GTGAACAA 105 ||||||||||||| ||||| || | || | | |||||||| |||| || |||||||| Sbjct 904942 ACCTGTCTCATGAAGGTCTCTAAATTCTAGGCACTCGTTCCCTCTTAGCGGAGTGAACAA 904883 Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 ||| || ||| || |||||| || ||||||||||||||| ||| || |||||| Sbjct 904882 TCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCTTCATTCAATTATCAAA 904823 Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG--GTAACTTT 223 |||| ||||||||| | |||| || ||| ||||||||||||||||||| ||||| || Sbjct 904822 AAGCCACGTCGCTAAAATCGCTCGGTAGCCGCAAGCCAGTTATCCCTGTGTAGTAACCTT 904763 Query 224 TCT 226 ||| Sbjct 904762 TCT 904760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854398650048