Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq8 482 8e-134 seq10 452 1e-124 seq13 98.7 3e-18 >seq8 Length=1026601 Score = 482 bits (534), Expect = 8e-134 Identities = 455/582 (78%), Gaps = 50/582 (9%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 913375 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 913316 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA---ACCCGG 123 ||||||||||||| ||||||||| ||||||||||||||| | ||||| || | || Sbjct 913315 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTCTCCATAGAGTGGG 913256 Query 124 ATC-----GGCCCGC-------GAAGGACC------TTAACGCCA-------GAAAATG- 157 | || | | ||||| | |||| | | ||| ||| Sbjct 913255 AGAAAAGTGGAACACCGTAGAAGAAGGCGCCACTTATTAATTCAAATAATATGAATATGC 913196 Query 158 -GTCGGTGAAGACC------AGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTA 210 |||| || ||| | |||| |||| | ||||||||| ||| ||| ||| Sbjct 913195 CGTCGA-GACGACATATTATATTTCCCTTTCAATAGATAAGTAAAACAACTTTAAAAGTA 913137 Query 211 GTGGTATTTCACTTGCGCCGAAACGG-------------CTCCCACTTATTCTACACCTC 257 ||||||||||||| || | || ||||||||||| ||||||||| Sbjct 913136 GTGGTATTTCACTGTCGTAAAGACATATTTCAGTCCTTACTCCCACTTATGCTACACCTC 913077 Query 258 TCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTG 317 | ||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||||| Sbjct 913076 TTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTCAACAGGGTCTTCTTTCCCCGCTG 913017 Query 318 ATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGG 377 ||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 913016 ATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGG 912957 Query 378 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 912956 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 912897 Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 |||||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||| Sbjct 912896 AGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTTGATTGAATTTCATCAAGTTGACA 912837 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTT 539 |||| |||||||||||||||||||||||||| || | || || Sbjct 912836 TTCAAAGCACTGGGCAGAAATCACATTGCGTTAATACCAGTT 912795 >seq10 Length=1594295 Score = 452 bits (500), Expect = 1e-124 Identities = 322/369 (87%), Gaps = 13/369 (4%) Strand=Plus/Plus Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-------- 233 || ||||| |||||| |||| ||| |||||||||||||| | ||| | | Sbjct 69594 ATGGATTA-GTAAAACAACGTTAAAAGTAGTGGTATTTCATTGACGCAAAGATCTTGCGA 69652 Query 234 ---CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAA 290 | ||||||||||| |||||||||| ||||| |||||||||||| ||||||||| || Sbjct 69653 TCTCTACTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGTCAGACTAGAGTAAA 69712 Query 291 GCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 69713 GCTCAACAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTT 69772 Query 351 CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 410 ||||||| || | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 69773 CGCTAGA-AGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 69831 Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC 470 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 69832 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGC 69891 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 ||||| ||||||||| ||| |||||||||| ||||||||||||||||||||||| || | Sbjct 69892 GCTTGATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTA 69951 Query 531 ACATCACTT 539 | | || || Sbjct 69952 ATACCAGTT 69960 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 69349 CTTTTAGTCTACAAGAGATTTCTGTTCTCTCTGAGCTTGTCTTTGGACATCTGCGTTATT 69408 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||||||||| ||||||||| ||||||||||||||||| ||||| Sbjct 69409 ATTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGACTATGTC 69455 >seq13 Length=2014888 Score = 98.7 bits (108), Expect = 3e-18 Identities = 142/200 (71%), Gaps = 19/200 (10%) Strand=Plus/Plus Query 210 AGTGGTATTTCACTTGCGCCGAAACG--------------GCTCCCACTTATTCTACACC 255 ||||||||||||||||||| |||| |||||||||||| |||||| Sbjct 125744 AGTGGTATTTCACTTGCGCGAAAACATTTTTCAGAATTCCGCTCCCACTTATGCTACACA 125803 Query 256 -TCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT--CCC 312 || ||| | ||| ||| || | || ||||| || | || |||||||||| | ||| Sbjct 125804 ATCGGAAGCCGTTTTACAGAGCCTACCTGGAGTCGAGTTTAATAGGGTCTTCTATGACCC 125863 Query 313 CGCTGATTCCGCCAAGCCCGTTC--CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGA 370 |||||| ||||||| || |||||| |||||||||||||||| | | |||||| Sbjct 125864 AACTGATTTAACCAAGCCTATTTTTCCTTGGTTGTGGTTTCGCTAGATTGCAAGTAGGGA 125923 Query 371 CAGTGGGAATCTCGTTAATC 390 ||| ||||| | ||| ||| Sbjct 125924 CAGCAGGAATTTTGTTTATC 125943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635197416384