Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2 260 4e-67 seq8 257 5e-66 seq10 208 2e-51 >seq2 Length=1525067 Score = 260 bits (288), Expect = 4e-67 Identities = 376/521 (72%), Gaps = 36/521 (7%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| | ||| | ||| ||||| ||||| ||||||||||||| | Sbjct 44398 TCATTCCAATTACAA-AGCCAGATTGGCCTTGTATTGTTATTTCTTGTCACTACCTCTCT 44456 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | |||||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 44457 TCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTC 44516 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGC 183 ||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| ||||| Sbjct 44517 AGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGGC 44575 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA-----ACCATCGCCGG 238 || || |||| |||| |||| ||||||| |||||| | || ||| || | || Sbjct 44576 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGATACACACTAAAAATGG 44635 Query 239 CTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTG 298 | || | | || | | || |||| | || ||| || | || Sbjct 44636 ATAAATCCATTACGTGTTACTTCTTTGTTATAATTCCTTAAG------TTAATAACTTT- 44688 Query 299 GTTTTTTAT-----CTAATAAATACACCCCTTC-------CGAAGTC--GGGGTTTTTAG 344 ||| |||| ||| || ||||| | || ||||||| | | | || Sbjct 44689 -TTTCTTATAAGGCTTAACAAGTACACAC--TCAAAGACGCGAAGTCGAGAGCGCTAAAG 44745 Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 || ||||||||| || || || ||||||| | || || | | |||| || | Sbjct 44746 CAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATA--TAGAAAATGTCAAGTAGATT 44803 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTC-AC-TGTATAGATTGCTTATACTTAGACA 462 ||||||| ||||||||||| ||||||||||| || | || | ||| ||||||| || Sbjct 44804 ATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCACT 44863 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||||||||||||||||||||||||||||||||||||||||| Sbjct 44864 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 44904 >seq8 Length=1026601 Score = 257 bits (284), Expect = 5e-66 Identities = 374/520 (72%), Gaps = 34/520 (7%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| | ||| | ||| ||||| ||||| ||||||||||||| | Sbjct 907765 TCATTCCAATTACAA-AGCCAGATTGGCCTTGTATTGTTATTTCTTGTCACTACCTCTCT 907707 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | |||||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 907706 TCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTC 907647 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGC 183 ||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| ||||| Sbjct 907646 AGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGGC 907588 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA-----ACCATCGCCGG 238 || || |||| |||| |||| ||||||| |||||| | || ||| || | || Sbjct 907587 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGATACACACTAAAAATGG 907528 Query 239 CTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTG 298 | || | | || | | || |||| | || ||| || | || Sbjct 907527 ATGAATCCATTACGTGTTACTTCTTTGTTATAATTCCTTAAG------TTAATAACTTT- 907475 Query 299 GTTTTTTAT-----CTAATAAATACACCCCTTCCGAAGTCGGGGT--------TTTTAGC 345 ||| |||| ||| || |||| | || || | ||||| | ||| Sbjct 907474 -TTTCTTATAAGGCTTAACAAGTACA-CACTCAAGACGCGGGGGTCAAGAGTGCTAAAGC 907417 Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGA 405 | ||||||||| || || || ||||||| | || || | | |||| || | | Sbjct 907416 AAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATA--TAGAAAATGTCAAGTAGATTA 907359 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTC-AC-TGTATAGATTGCTTATACTTAGACAT 463 |||||| ||||||||||| ||||||||||| || | || | ||| ||||||| || | Sbjct 907358 TAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCACTT 907299 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 |||||||||||||||||||||||||||||||||||||||| Sbjct 907298 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 907259 >seq10 Length=1594295 Score = 208 bits (230), Expect = 2e-51 Identities = 164/194 (85%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 35 TGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGC 94 ||||| ||||| ||||||||||||| | | | |||||||||||| ||||||||| Sbjct 81966 TGTATTGTTATTTCTTGTCACTACCTCTCTTCTTTAGAATTGGGTAATTTACGCGCCTGC 82025 Query 95 TGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154 |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 82026 TGCCTTCCTTAGATGTGGTAGCTATTTCTCAGGCTCCCTCTCCGGAATCGAACTCTAATT 82085 Query 155 CCCCGTTACCCGTTGATA-CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 213 |||||||||||| | ||| ||||| ||||||| || |||| |||| |||| ||||||| | Sbjct 82086 CCCCGTTACCCG-TCATAGCCATGTTAGGCCAATACCCTAACATCAAAAGCTGATAGGTC 82144 Query 214 AGAAATTTGAATGA 227 ||||| | || ||| Sbjct 82145 AGAAACTCGATTGA 82158 Score = 125 bits (138), Expect = 2e-26 Identities = 129/165 (78%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT-AGTAAGGTACTATCAAATAA 401 |||| ||||||||| || || || ||||||| | | | || | | |||| || Sbjct 82284 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATGAAAAAAAAAATGTCAAGTAG 82343 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATA--GAT-TGCTTATACTTA 458 | ||||||| ||||||||||| ||||||||||| |||| ||| ||| ||||||| Sbjct 82344 ATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTGCATATAACGATATGCATATACTTT 82403 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 82404 CACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 82448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510397613568