Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 >seq5 Length=2463301 Score = 114 bits (126), Expect = 1e-20 Identities = 299/456 (66%), Gaps = 0/456 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || || ||||| | ||| | || ||||| || || | |||| | | ||||| | Sbjct 675145 CATGAAAAGGTCAGGGACCCATACAGCATAGAAAAGGTCTCTAGCTCTTAGTTCCTCTTT 675086 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||||||||||| || | ||| || || || || || || | ||||||||||| | ||| Sbjct 675085 CCCGTGATTTTTACGAAGGTCTAGAAATTCGAAAATATCTGAGTGCCATGGTTCGATGTA 675026 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 | || || || ||| | | || |||||||||||||| || || | ||| || || Sbjct 675025 CACTGCAAAGGATCCCTTTCTCTTTCCGCCACCTTGGTCTACATATCTAGCTGTATCATT 674966 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGA 66579 ||| || | || ||| || || | |||||| ||| | || ||||| || ||| ||| Sbjct 674965 GAACACCCTCAGCATTGGCACTAACCCGTTGGATATTCCGTTGGTTCCTCTAATGTAGGA 674906 Query 66580 TCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGC 66639 | || | | ||||| || || | ||||| ||||| ||||| || || Sbjct 674905 GTTTTGTCCTCTAATATCCTGTACCGCTACTCCAATTCCACCAGCCGTTTTGCTAATCAG 674846 Query 66640 AGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAG 66699 || || | || ||| ||| || || ||||| || ||| | || || || || Sbjct 674845 GGCGCACTGTTTCAGCGTCTCGAAAATACCTTCAATCGAATCAGCTTTCATACAGAGAAG 674786 Query 66700 GTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTG 66759 | | || || | ||| ||| |||| || | | ||| | || ||||| ||||| Sbjct 674785 GAAACAGGACGACATTTGCGGTCTGGGCGTCCCAGAATTGAACAACGTAGGTGTTGCGTG 674726 Query 66760 CGTAAAGTAATGGCGAGACATGTAATTGTACGTCTC 66795 ||||| || | ||||||| || |||||||| Sbjct 674725 TGTAAAATATTTTTGAGACATAAGATGATACGTCTC 674690 Score = 86.0 bits (94), Expect = 5e-12 Identities = 242/366 (66%), Gaps = 8/366 (2%) Strand=Plus/Plus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 |||||||| |||||||| ||||||||||| | || || | || ||||| | || || Sbjct 2269644 TACAAAAAAGCGGAAGCGTCCTTCTGGACAGCTGAAGAAATTGACTTGTCTAGCGATTTG 2269703 Query 61159 AATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTC 61218 || || | || ||| |||| |||||||||| |||||||||||||| ||| Sbjct 2269704 AAAGATTTCGAAAAATTAAATGAAAATGAAAAACATTTCATAAAACATGTGTTGGCTTTC 2269763 Query 61219 TTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTA--TTGGAACGTTTCGCGCAGGAGG 61276 || || || || || || || || |||||| | || ||| ||| | | Sbjct 2269764 TTCGCAGCGAGTGATGGAATTGTGTTGGAAAATTTAGCAAGCAAATTTTTACGC--CAAG 2269821 Query 61277 TGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACT 61336 ||||| | ||||||| || ||| |||||||||||| | || ||| |||||| Sbjct 2269822 TGCAAATTACGGAGGCAAAGAAATTTTACTCCTTCCAGATTGCTGTTGAAAATATCCACT 2269881 Query 61337 CGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACG--TGAACG 61394 | |||| ||| || | | || || | ||||| | ||| | |||| | ||||| Sbjct 2269882 CAGAGACGTATAGCTTGTTAATAGACAACTACATAAAGGACGAGAAGGAAAGAATGAAC- 2269940 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 || ||| | || || || | || || || |||||| |||||| ||||| ||| Sbjct 2269941 CTTTTTC-ACGCGATTGAAAATATTCCCGCAGTGAAGAACAAAGCGTTGTGGGCAGCCAA 2269999 Query 61455 TTGGAT 61460 ||||| Sbjct 2270000 GTGGAT 2270005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567234433120