Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq10 138 2e-30 seq3 138 2e-30 seq5 134 2e-29 >seq10 Length=1763958 Score = 138 bits (152), Expect = 2e-30 Identities = 190/267 (71%), Gaps = 38/267 (14%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 169440 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 169497 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 169498 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTACTGATAAAGAT 169557 Query 119 TACCCGGACCTGTC------GGCCAAG-----------------------GTGA---TAG 146 |||| || | || || ||| || | ||| Sbjct 169558 TACCTACACTTTTCAGTGGAGGAAAAGTACGAAATGCGCAAGCGCAAAACGTAATTTTAG 169617 Query 147 --ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 204 ||||||| | | ||||||||||| ||||||| ||| || ||||||||| ||||||| Sbjct 169618 TAACTCGTTATACATATCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACA 169677 Query 205 GACCTGTTATTGCCTCAAACTTCCGTG 231 |||||||| |||||| |||||||| || Sbjct 169678 GACCTGTTGTTGCCTTAAACTTCCTTG 169704 >seq3 Length=1147333 Score = 138 bits (152), Expect = 2e-30 Identities = 190/267 (71%), Gaps = 38/267 (14%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 95661 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 95718 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 95719 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTACTGATAAAGAT 95778 Query 119 TACCCGGACCTGTC------GGCCAAG-----------------------GTGA---TAG 146 |||| || | || || ||| || | ||| Sbjct 95779 TACCTACACTTTTCAGTGGAGGAAAAGTACGCAATGCGCAAGCGCAAAACGTAATTTTAG 95838 Query 147 --ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 204 ||||||| | | ||||||||||| ||||||| ||| || ||||||||| ||||||| Sbjct 95839 TAACTCGTTATACATATCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACA 95898 Query 205 GACCTGTTATTGCCTCAAACTTCCGTG 231 |||||||| |||||| |||||||| || Sbjct 95899 GACCTGTTGTTGCCTTAAACTTCCTTG 95925 >seq5 Length=1520521 Score = 134 bits (148), Expect = 2e-29 Identities = 189/269 (70%), Gaps = 40/269 (15%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || |||| ||| |||||||||| ||| | Sbjct 135336 GTACAAAGGGCAGGGACGTAGTCAGCACAATCTA-ATGAATCGTGCTTACTAGGCATT-C 135393 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 135394 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTATTGATAAAGAT 135453 Query 119 TACCCGGACCTGTC------GGCCAAG-GTGATA-------------------------- 145 |||| |||| || || ||| ||| | Sbjct 135454 TACCTACACCTTTCAGTGGAGGAAAAGTATGAAATGTACAGAAGCACAAATCATAATTTT 135513 Query 146 ---GACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCA 202 ||||||| | | ||||||||||| ||||||| ||| || ||||||||| ||||| Sbjct 135514 TGTAACTCGTTATACATATCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCA 135573 Query 203 CAGACCTGTTATTGCCTCAAACTTCCGTG 231 |||||||||| |||||| |||||||| || Sbjct 135574 CAGACCTGTTGTTGCCTTAAACTTCCTTG 135602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999898010