Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq10 111 3e-22 seq3 109 1e-21 seq5 87.8 3e-15 >seq10 Length=1763958 Score = 111 bits (122), Expect = 3e-22 Identities = 186/267 (70%), Gaps = 29/267 (11%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG---------GCCTTTGCTCG----AATA 121 ||||||||| |||||||||||||||||||| || |||| || |||| Sbjct 170561 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACAGATATAGCATTTGTGCGTTTGAATA 170502 Query 122 CATTAGCATGGAATAATAGAATAGGACGTGCG---------GTTCTATTTTGTTGGTTTC 172 | |||||||||||| | ||| | || | ||||| |||| || ||| Sbjct 170501 CTACAGCATGGAATAACAAAATTGAACAAGTCAAAATTTTTGTTCTTTTTTCTTATTTT- 170443 Query 173 TAGGACCGCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAG 231 || | || | |||||||||| ||| | ||||| | ||||||| |||||||| Sbjct 170442 --GG--CTTAGTTACGATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAG 170387 Query 232 GTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTT 291 ||||||||||| ||||| || |||| ||| ||||||||||| || || | || || Sbjct 170386 GTGAAATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTC 170327 Query 292 CATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||| |||||||||||| ||| Sbjct 170326 CATTAATCA-AGAACGAAAGTTAAGGG 170301 >seq3 Length=1147333 Score = 109 bits (120), Expect = 1e-21 Identities = 184/263 (70%), Gaps = 20/263 (8%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG---------GCCTTTGCTCG----AATA 121 ||||||||| |||||||||||||||||||| || |||| || |||| Sbjct 96783 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACAGATATAGCATTTGTGCGTTTGAATA 96724 Query 122 CATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-- 179 | |||||||||||| | ||| | || | | ||||||| ||| | | Sbjct 96723 CTACAGCATGGAATAACAAAATTGAACAAGTCAAAATTTTTTGTTCTTTTTTCTTATTTT 96664 Query 180 -GCC--GTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGA 235 || || | |||||||||| ||| | ||||| | ||||||| |||||||||||| Sbjct 96663 GGCTTAGTTACGATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTGA 96604 Query 236 AATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATT 295 ||||||| ||||| || |||| ||| ||||||||||| || || | || || |||| Sbjct 96603 AATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATT 96544 Query 296 AATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||| ||| Sbjct 96543 AATCA-AGAACGAAAGTTAAGGG 96522 >seq5 Length=1520521 Score = 87.8 bits (96), Expect = 3e-15 Identities = 181/265 (68%), Gaps = 22/265 (8%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG---------GCCTTT------GCTCGAA 119 ||||||||| |||||| ||||||||||||| || ||| | | ||| Sbjct 136511 TTACTTTGAGTAAATTAAAGTGTTCAAAGCAAACAGATAAAGCATTTTTGTGCGTTTGAA 136452 Query 120 TACATTAGCATGGAATAATAGAATAGGACGTG-CGGTTCTAT-TTTGTTGGTTTCTAGGA 177 ||| |||||||||||| | ||| | || | | |||| ||| || ||| || Sbjct 136451 TACTACAGCATGGAATAACAAAATTGAACAGGTCAAAACTATGTTTCTTTTTTTTTATTT 136392 Query 178 CCGCCGTAAT---GATTAATAGGGATAGTCGGGGGTG-TCAGTATTCAATTGTCAGAGGT 233 | | || | |||||||||| |||| |||| | ||||||| |||||||||| Sbjct 136391 TTGGCTTAGTTACGATTAATAGGAGTAGTTTGGGGACATTTGTATTCAGATGTCAGAGGT 136332 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 |||||||| ||||| || |||| ||| |||||||| || || | | || || || Sbjct 136331 GAAATTCTAAGATTTTCTGGAGACAAACAACTGCGAAGGCATTTGTCTAAAATACTTCCA 136272 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| |||||||||||| ||| Sbjct 136271 TTAATCA-AGAACGAAAGTTAAGGG 136248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915199871872