Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 2e-15 seq3 89.7 2e-15 seq8 87.8 7e-15 seq10 86.0 3e-14 seq1 77.0 1e-11 >seq5 Length=1520521 Score = 89.7 bits (98), Expect = 2e-15 Identities = 114/152 (75%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGG--TAAATTTCTTCTAAAGCTAA 97 |||||| ||| |||| || || ||| | ||||| | | || ||||| ||||||||| Sbjct 127240 GAGTCGTGTTCTTTGAGATTGGAGCAC-AAATGCGTGTGATACATTTCACATAAAGCTAA 127182 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTG 156 |||| | || ||||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 127181 ATATGTGTAGGAAACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAG 127122 Query 157 GAAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 ||| ||| | |||||||| || |||||| ||| Sbjct 127121 GAATGAGCATTTAAAAAGTACCTGAAATCGTT 127090 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||||||| || | |||||||| || ||||||| || || || ||| Sbjct 126513 TTGAGTATGAGCATATTTGGTAGGACCCGAGAGGCTTTGAACTAAGCGTGGTGAGATTGA 126454 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 126453 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 126394 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 126393 ATCACGTTTAGGGGCGA 126377 >seq3 Length=1147333 Score = 89.7 bits (98), Expect = 2e-15 Identities = 118/160 (74%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || || | | || ||||| |||||||||| Sbjct 94319 GAGTCGTGTTCTTTGAGATTGGAGCACAAATGTGTGTGATACATTTCACATAAAGCTAAA 94260 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | |||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 94259 TATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 94200 Query 158 AAAGAG-AGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| ||||| || || |||||| ||| | | |||| Sbjct 94199 AATGAGCCATTAAATAGTACCTGAAATCGTTAAGATGGAA 94160 Score = 86.0 bits (94), Expect = 3e-14 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||||||||||| || | |||||||| || ||||||| || ||| || ||| Sbjct 93678 TTGAGTAAGAGCATATTTGGTAGGACCCGAGAGGCTTTGAACTAAGCGTGACGAGATTGA 93619 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 93618 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 93559 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 93558 GTCACGTTTAGGGGCGA 93542 >seq8 Length=2003671 Score = 87.8 bits (96), Expect = 7e-15 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || || | | || ||||| |||||||||| Sbjct 1880341 GAGTCGTGTTCTTTGAGATTGGAGCACAAATGTGTGTGATACATTTCACATAAAGCTAAA 1880400 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | |||||||||||| ||||||| |||| ||||||||||| || || || Sbjct 1880401 TATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGAGCTCAGG 1880460 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 || ||| ||||| || || |||||| ||| Sbjct 1880461 AATGAGCATTAAATAGTACCTGAAATCGTT 1880490 >seq10 Length=1763958 Score = 86.0 bits (94), Expect = 3e-14 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||||||||||| || | |||||||| || ||||||| || ||| || ||| Sbjct 167441 TTGAGTAAGAGCATATTTGGTAGGACCCGAGAGGCTTTGAACTAAGCGTGACGAGATTGA 167382 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 167381 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 167322 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 167321 GTCACGTTTAGGGGCGA 167305 Score = 84.2 bits (92), Expect = 9e-14 Identities = 118/161 (73%), Gaps = 5/161 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAA--ATTTCTTCTAAAGCTAA 97 |||||| ||| |||| || || ||| | ||||| | | | ||||| ||||||||| Sbjct 168081 GAGTCGTGTTCTTTGAGATTGGAGCAC-AAATGAGTGTGATGCATTTCACATAAAGCTAA 168023 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTG 156 |||| | |||||||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 168022 ATATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAG 167963 Query 157 GAAAGAG-AGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||| ||| ||||| || || |||||| ||| | | |||| Sbjct 167962 GAATGAGCCATTAAATAGTACCTGAAATCGTTAAGATGGAA 167922 >seq1 Length=1146425 Score = 77.0 bits (84), Expect = 1e-11 Identities = 79/101 (78%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 89 TAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA- 147 |||||||||||||| | |||||||||||| ||||||| || | ||||||||||| Sbjct 1058418 TAAAGCTAAATATTCGTAGGAGACCGATAGCAAACAAGTACCGTAAGGGAAAGATGAAAT 1058477 Query 148 AGCACTTTGGAAAGAGAG-TTAAAAAGCACGTGAAATTGTT 187 || ||| |||| ||| | ||||| || || |||||| ||| Sbjct 1058478 AGTACTCAGGAATGAGCGATTAAATAGTACCTGAAATCGTT 1058518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999699700