Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq10 291 1e-76 seq5 291 1e-76 seq3 291 1e-76 seq8 143 5e-32 seq1 138 2e-30 >seq10 Length=1763958 Score = 291 bits (322), Expect = 1e-76 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 164911 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 164970 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 164971 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 165030 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 165031 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 165090 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 165091 CTGTGGTAACTTTTCAGACACCTCTA 165116 >seq5 Length=1520521 Score = 291 bits (322), Expect = 1e-76 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 123884 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 123943 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 123944 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 124003 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 124004 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 124063 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 124064 CTGTGGTAACTTTTCAGACACCTCTA 124089 >seq3 Length=1147333 Score = 291 bits (322), Expect = 1e-76 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 91153 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 91212 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 91213 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 91272 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 91273 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 91332 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 91333 CTGTGGTAACTTTTCAGACACCTCTA 91358 >seq8 Length=2003671 Score = 143 bits (158), Expect = 5e-32 Identities = 158/204 (77%), Gaps = 11/204 (5%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAA-CTAACCT--GTCTCATGACGGTCT--AAACCCAGCTCACGTT 85 ||||||||||| ||||| || | |||||||||| | | |||| ||||||||||| Sbjct 1884133 TCATCAGTAGGTTAAAAACTGGGCAAAGTCTCATGACTGCCCCGAAACTCAGCTCACGTT 1884074 Query 86 CCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGA 145 |||| |||| ||||||||||||| || ||| || |||| | || |||||||||| Sbjct 1884073 CCCTGTTAGCGGGTGAACAATCCGACACTTTGGGACTTCTTCGTCCCAATGATAGGAAAT 1884014 Query 146 GCCGACAT----CG-AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAG 200 || || || || || ||||||||||| ||||||||| |||||| ||| |||||||| Sbjct 1884013 GCTGATATATTACGAAATGATCAAAAAGCTACGTCGCTA-AAACGCTCGGCCGCCACAAG 1883955 Query 201 CCAGTTATCCCTGTGGTAACTTTT 224 |||||||||||| | ||||| || Sbjct 1883954 CCAGTTATCCCTATTATAACTCTT 1883931 >seq1 Length=1146425 Score = 138 bits (152), Expect = 2e-30 Identities = 143/183 (78%), Gaps = 7/183 (4%) Strand=Plus/Minus Query 51 ACCTGTCTCATGACGGTCT---AAACCCAG-CTCACGTTCCCTATTAGTGG-GTGAACAA 105 ||||||||||||| ||||| || | || | | |||||||| |||| || |||||||| Sbjct 1063261 ACCTGTCTCATGAAGGTCTCTAAATTCTAGGCACTCGTTCCCTCTTAGCGGAGTGAACAA 1063202 Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 ||| || ||| || |||||| || ||||||||||||||| ||| || |||||| Sbjct 1063201 TCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCTTCATTCAATTATCAAA 1063142 Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG--GTAACTTT 223 |||| ||||||||| | |||| || ||| ||||||||||||||||||| ||||| || Sbjct 1063141 AAGCCACGTCGCTAAAATCGCTCGGTAGCCGCAAGCCAGTTATCCCTGTGTAGTAACCTT 1063082 Query 224 TCT 226 ||| Sbjct 1063081 TCT 1063079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854399880384