Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq5 136 7e-30 seq10 131 3e-28 seq3 131 3e-28 >seq5 Length=1520521 Score = 136 bits (150), Expect = 7e-30 Identities = 205/296 (69%), Gaps = 38/296 (13%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 135632 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 135573 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT---- 185 |||| ||||||||| || ||| ||||||| |||||||||| | |||||||| Sbjct 135572 GATGTCCTTAGATGAACTAGGCTGCACGCGTGCTACACTGATATGTATAACGAGTTACAA 135513 Query 186 -----------------------CATCAC---CTTGGCC------GGAAGGTCTGGGTAA 213 ||| | ||| || | ||||| | ||||| Sbjct 135512 AAATTATGATTTGTGCTTCTGTACATTTCATACTTTTCCTCCACTGAAAGGTGTAGGTAA 135453 Query 214 TCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGG 272 |||| | || | | ||||| |||||||||| |||||||||||| |||| ||||||| Sbjct 135452 TCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAATTATTAATCTTGAACGAGG 135393 Query 273 AATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||||||||| || |||| || | | ||| ||||||||||||||||||| Sbjct 135392 AATGCCTAGTAAGCACGATTCATTAGATTGTGCTGACTACGTCCCTGCCCTTTGTA 135337 >seq10 Length=1763958 Score = 131 bits (144), Expect = 3e-28 Identities = 203/294 (69%), Gaps = 36/294 (12%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 169734 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 169675 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC--- 186 |||| ||||||||| || ||| ||||||| |||||||||| | |||||||| Sbjct 169674 GATGTCCTTAGATGAACTAGGCTGCACGCGTGCTACACTGATATGTATAACGAGTTACTA 169615 Query 187 --ATCAC-----------------------CTTGGCC------GGAAGGTCTGGGTAATC 215 || || ||| || | || || | ||||||| Sbjct 169614 AAATTACGTTTTGCGCTTGCGCATTTCGTACTTTTCCTCCACTGAAAAGTGTAGGTAATC 169555 Query 216 TTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAA 274 || | | | | ||||| |||||||||| |||||||||||| |||| ||||||||| Sbjct 169554 TTTATCAGTACATATCGTGATGGGGATAGATTATTGCAATTATTAATCTTGAACGAGGAA 169495 Query 275 TGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||||||| | ||||||| | | ||| ||||||||||||||||||| Sbjct 169494 TGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGTA 169441 >seq3 Length=1147333 Score = 131 bits (144), Expect = 3e-28 Identities = 203/294 (69%), Gaps = 36/294 (12%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 95955 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 95896 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC--- 186 |||| ||||||||| || ||| ||||||| |||||||||| | |||||||| Sbjct 95895 GATGTCCTTAGATGAACTAGGCTGCACGCGTGCTACACTGATATGTATAACGAGTTACTA 95836 Query 187 --ATCAC-----------------------CTTGGCC------GGAAGGTCTGGGTAATC 215 || || ||| || | || || | ||||||| Sbjct 95835 AAATTACGTTTTGCGCTTGCGCATTGCGTACTTTTCCTCCACTGAAAAGTGTAGGTAATC 95776 Query 216 TTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAA 274 || | | | | ||||| |||||||||| |||||||||||| |||| ||||||||| Sbjct 95775 TTTATCAGTACATATCGTGATGGGGATAGATTATTGCAATTATTAATCTTGAACGAGGAA 95716 Query 275 TGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||||||| | ||||||| | | ||| ||||||||||||||||||| Sbjct 95715 TGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGTA 95662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199867392