Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq10 477 3e-132 seq5 461 2e-127 seq3 459 9e-127 seq8 98.7 3e-18 >seq10 Length=1763958 Score = 477 bits (528), Expect = 3e-132 Identities = 454/582 (78%), Gaps = 50/582 (9%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 165229 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 165288 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA---ACCCGG 123 ||||||||||||| ||||||||| ||||||||||||||| | ||||| || | || Sbjct 165289 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTCTCCATAGAGTGGG 165348 Query 124 ATC-----GGCCCGC-------GAAGGACC------TTAACGCCA-------GAAAATG- 157 | || | | ||||| | |||| | | ||| ||| Sbjct 165349 AGAAAAGTGGAACACCGTAGAAGAAGGCGCCACTTATTAATTCAAATAATATGAATATGC 165408 Query 158 -GTCGGTGAAGACC------AGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTA 210 |||| || ||| | |||| |||| | ||||||||| ||| ||| ||| Sbjct 165409 CGTCGA-GACGACATATTATATTTCCCTTTCAATAGATAAGTAAAACAACTTTAAAAGTA 165467 Query 211 GTGGTATTTCACTTGCGCCGAAACGG-------------CTCCCACTTATTCTACACCTC 257 ||||||||||||| || | || ||||||||||| ||||||||| Sbjct 165468 GTGGTATTTCACTGTCGTAAAGACATATTTCAGTCCTTACTCCCACTTATGCTACACCTC 165527 Query 258 TCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTG 317 | ||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||||| Sbjct 165528 TTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTCAACAGGGTCTTCTTTCCCCGCTG 165587 Query 318 ATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGG 377 ||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 165588 ATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGG 165647 Query 378 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 165648 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 165707 Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 |||||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||| Sbjct 165708 AGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTTGATTGAATTTCATCAAGTTGACA 165767 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTT 539 |||| ||||||||||||||||||||||| || || | || || Sbjct 165768 TTCAAAGCACTGGGCAGAAATCACATTGTGTTAATACCAGTT 165809 >seq5 Length=1520521 Score = 461 bits (510), Expect = 2e-127 Identities = 323/369 (88%), Gaps = 12/369 (3%) Strand=Plus/Plus Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-------- 233 || ||||| |||||| |||| ||| |||||||||||||| | ||| | | Sbjct 124446 ATGGATTA-GTAAAACAACGTTAAAAGTAGTGGTATTTCATTGACGCAAAGATCTTGCGA 124504 Query 234 ---CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAA 290 | ||||||||||| |||||||||| ||||| |||||||||||| ||||||||| || Sbjct 124505 TCTCTACTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGTCAGACTAGAGTAAA 124564 Query 291 GCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 124565 GCTCAACAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTT 124624 Query 351 CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 410 |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 124625 CGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 124684 Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC 470 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 124685 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGC 124744 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 ||||| ||||||||| ||| |||||||||| ||||||||||||||||||||||| || | Sbjct 124745 GCTTGATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTA 124804 Query 531 ACATCACTT 539 | | || || Sbjct 124805 ATACCAGTT 124813 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 124201 CTTTTAGTCTACAAGAGATTTCTGTTCTCTCTGAGCTTGTCTTTGGACATCTGCGTTATT 124260 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||||||||| ||||||||| ||||||||||||||||| ||||| Sbjct 124261 ATTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGACTATGTC 124307 >seq3 Length=1147333 Score = 459 bits (508), Expect = 9e-127 Identities = 319/365 (87%), Gaps = 13/365 (4%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG----------- 236 ||||||||| ||| ||| |||||||||||||||| || | ||| Sbjct 91686 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGTAAAGACGTATTTCAGTCCT 91745 Query 237 --CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 91746 TACTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTC 91805 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 91806 AACAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 91865 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 91866 AGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 91925 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 91926 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTT 91985 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 | ||||||||| ||| |||||||||| |||||||||||||||||||||||||| || | Sbjct 91986 GATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGCGTTAATAC 92045 Query 535 CACTT 539 || || Sbjct 92046 CAGTT 92050 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 91470 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 91529 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 91530 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 91576 >seq8 Length=2003671 Score = 98.7 bits (108), Expect = 3e-18 Identities = 142/200 (71%), Gaps = 19/200 (10%) Strand=Plus/Minus Query 210 AGTGGTATTTCACTTGCGCCGAAACG--------------GCTCCCACTTATTCTACACC 255 ||||||||||||||||||| |||| |||||||||||| |||||| Sbjct 1883515 AGTGGTATTTCACTTGCGCGAAAACATTTTTCAGAATTCCGCTCCCACTTATGCTACACA 1883456 Query 256 -TCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT--CCC 312 || ||| | ||| ||| || | || ||||| || | || |||||||||| | ||| Sbjct 1883455 ATCGGAAGCCGTTTTACAGAGCCTACCTGGAGTCGAGTTTAATAGGGTCTTCTATGACCC 1883396 Query 313 CGCTGATTCCGCCAAGCCCGTTC--CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGA 370 |||||| ||||||| || |||||| |||||||||||||||| | | |||||| Sbjct 1883395 AACTGATTTAACCAAGCCTATTTTTCCTTGGTTGTGGTTTCGCTAGATTGCAAGTAGGGA 1883336 Query 371 CAGTGGGAATCTCGTTAATC 390 ||| ||||| | ||| ||| Sbjct 1883335 CAGCAGGAATTTTGTTTATC 1883316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199771072