Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq10 260 4e-67 seq3 257 5e-66 seq5 215 2e-53 >seq10 Length=1763958 Score = 260 bits (288), Expect = 4e-67 Identities = 376/521 (72%), Gaps = 36/521 (7%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| | ||| | ||| ||||| ||||| ||||||||||||| | Sbjct 170840 TCATTCCAATTACAA-AGCCAGATTGGCCTTGTATTGTTATTTCTTGTCACTACCTCTCT 170898 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | |||||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 170899 TCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTC 170958 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGC 183 ||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| ||||| Sbjct 170959 AGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGGC 171017 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA-----ACCATCGCCGG 238 || || |||| |||| |||| ||||||| |||||| | || ||| || | || Sbjct 171018 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGATACACACTAAAAATGG 171077 Query 239 CTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTG 298 | || | | || | | || |||| | || ||| || | || Sbjct 171078 ATAAATCCATTACGTGTTACTTCTTTGTTATAATTCCTTAAG------TTAATAACTTT- 171130 Query 299 GTTTTTTAT-----CTAATAAATACACCCCTTC-------CGAAGTC--GGGGTTTTTAG 344 ||| |||| ||| || ||||| | || ||||||| | | | || Sbjct 171131 -TTTCTTATAAGGCTTAACAAGTACACAC--TCAAAGACGCGAAGTCGAGAGCGCTAAAG 171187 Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 || ||||||||| || || || ||||||| | || || | | |||| || | Sbjct 171188 CAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATA--TAGAAAATGTCAAGTAGATT 171245 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTC-AC-TGTATAGATTGCTTATACTTAGACA 462 ||||||| ||||||||||| ||||||||||| || | || | ||| ||||||| || Sbjct 171246 ATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCACT 171305 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||||||||||||||||||||||||||||||||||||||||| Sbjct 171306 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 171346 >seq3 Length=1147333 Score = 257 bits (284), Expect = 5e-66 Identities = 374/520 (72%), Gaps = 34/520 (7%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| | ||| | ||| ||||| ||||| ||||||||||||| | Sbjct 97062 TCATTCCAATTACAA-AGCCAGATTGGCCTTGTATTGTTATTTCTTGTCACTACCTCTCT 97120 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | |||||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 97121 TCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTC 97180 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGC 183 ||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| ||||| Sbjct 97181 AGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGGC 97239 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA-----ACCATCGCCGG 238 || || |||| |||| |||| ||||||| |||||| | || ||| || | || Sbjct 97240 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGATACACACTAAAAATGG 97299 Query 239 CTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTG 298 | || | | || | | || |||| | || ||| || | || Sbjct 97300 ATGAATCCATTACGTGTTACTTCTTTGTTATAATTCCTTAAG------TTAATAACTTT- 97352 Query 299 GTTTTTTAT-----CTAATAAATACACCCCTTCCGAAGTCGGGGT--------TTTTAGC 345 ||| |||| ||| || |||| | || || | ||||| | ||| Sbjct 97353 -TTTCTTATAAGGCTTAACAAGTACA-CACTCAAGACGCGGGGGTCAAGAGTGCTAAAGC 97410 Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGA 405 | ||||||||| || || || ||||||| | || || | | |||| || | | Sbjct 97411 AAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATA--TAGAAAATGTCAAGTAGATTA 97468 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTC-AC-TGTATAGATTGCTTATACTTAGACAT 463 |||||| ||||||||||| ||||||||||| || | || | ||| ||||||| || | Sbjct 97469 TAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCACTT 97528 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 |||||||||||||||||||||||||||||||||||||||| Sbjct 97529 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 97568 >seq5 Length=1520521 Score = 215 bits (238), Expect = 2e-53 Identities = 183/223 (82%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 6 CATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCG 65 |||||||||||||| ||| | | ||||| ||||| ||||||||||||| | Sbjct 136808 CATTCCAATTACAAAACCAGTTTTGGTCTTGTATTGTTATTTCTTGTCACTACCTCTCTT 136867 Query 66 TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA 125 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||||| Sbjct 136868 CTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTCA 136927 Query 126 GGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGCC 184 |||||||||||||||||||||| |||||||||||||||||| | ||| ||||| |||||| Sbjct 136928 GGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGGCC 136986 Query 185 ACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 | || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 136987 AATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 137029 Score = 125 bits (138), Expect = 2e-26 Identities = 129/165 (78%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT-AGTAAGGTACTATCAAATAA 401 |||| ||||||||| || || || ||||||| | | | || | | |||| || Sbjct 137155 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATGAAAAAAAAAATGTCAAGTAG 137214 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATA--GAT-TGCTTATACTTA 458 | ||||||| ||||||||||| ||||||||||| |||| ||| ||| ||||||| Sbjct 137215 ATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTGCATATAACGATATGCATATACTTT 137274 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 137275 CACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 137319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399788544