Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 114 1e-20 seq13 86.0 5e-12 >seq4 Length=1862670 Score = 114 bits (126), Expect = 1e-20 Identities = 299/456 (66%), Gaps = 0/456 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || || ||||| | ||| | || ||||| || || | |||| | | ||||| | Sbjct 757137 CATGAAAAGGTCAGGGACCCATACAGCATAGAAAAGGTCTCTAGCTCTTAGTTCCTCTTT 757078 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||||||||||| || | ||| || || || || || || | ||||||||||| | ||| Sbjct 757077 CCCGTGATTTTTACGAAGGTCTAGAAATTCGAAAATATCTGAGTGCCATGGTTCGATGTA 757018 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 | || || || ||| | | || |||||||||||||| || || | ||| || || Sbjct 757017 CACTGCAAAGGATCCCTTTCTCTTTCCGCCACCTTGGTCTACATATCTAGCTGTATCATT 756958 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGA 66579 ||| || | || ||| || || | |||||| ||| | || ||||| || ||| ||| Sbjct 756957 GAACACCCTCAGCATTGGCACTAACCCGTTGGATATTCCGTTGGTTCCTCTAATGTAGGA 756898 Query 66580 TCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGC 66639 | || | | ||||| || || | ||||| ||||| ||||| || || Sbjct 756897 GTTTTGTCCTCTAATATCCTGTACCGCTACTCCAATTCCACCAGCCGTTTTGCTAATCAG 756838 Query 66640 AGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAG 66699 || || | || ||| ||| || || ||||| || ||| | || || || || Sbjct 756837 GGCGCACTGTTTCAGCGTCTCGAAAATACCTTCAATCGAATCAGCTTTCATACAGAGAAG 756778 Query 66700 GTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTG 66759 | | || || | ||| ||| |||| || | | ||| | || ||||| ||||| Sbjct 756777 GAAACAGGACGACATTTGCGGTCTGGGCGTCCCAGAATTGAACAACGTAGGTGTTGCGTG 756718 Query 66760 CGTAAAGTAATGGCGAGACATGTAATTGTACGTCTC 66795 ||||| || | ||||||| || |||||||| Sbjct 756717 TGTAAAATATTTTTGAGACATAAGATGATACGTCTC 756682 >seq13 Length=1997354 Score = 86.0 bits (94), Expect = 5e-12 Identities = 242/366 (66%), Gaps = 8/366 (2%) Strand=Plus/Plus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 |||||||| |||||||| ||||||||||| | || || | || ||||| | || || Sbjct 1647673 TACAAAAAAGCGGAAGCGTCCTTCTGGACAGCTGAAGAAATTGACTTGTCTAGCGATTTG 1647732 Query 61159 AATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTC 61218 || || | || ||| |||| |||||||||| |||||||||||||| ||| Sbjct 1647733 AAAGATTTCGAAAAATTAAATGAAAATGAAAAACATTTCATAAAACATGTGTTGGCTTTC 1647792 Query 61219 TTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTA--TTGGAACGTTTCGCGCAGGAGG 61276 || || || || || || || || |||||| | || ||| ||| | | Sbjct 1647793 TTCGCAGCGAGTGATGGAATTGTGTTGGAAAATTTAGCAAGCAAATTTTTACGC--CAAG 1647850 Query 61277 TGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACT 61336 ||||| | ||||||| || ||| |||||||||||| | || ||| |||||| Sbjct 1647851 TGCAAATTACGGAGGCAAAGAAATTTTACTCCTTCCAGATTGCTGTTGAAAATATCCACT 1647910 Query 61337 CGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACG--TGAACG 61394 | |||| ||| || | | || || | ||||| | ||| | |||| | ||||| Sbjct 1647911 CAGAGACGTATAGCTTGTTAATAGACAACTACATAAAGGACGAGAAGGAAAGAATGAAC- 1647969 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 || ||| | || || || | || || || |||||| |||||| ||||| ||| Sbjct 1647970 CTTTTTC-ACGCGATTGAAAATATTCCCGCAGTGAAGAACAAAGCGTTGTGGGCAGCCAA 1648028 Query 61455 TTGGAT 61460 ||||| Sbjct 1648029 GTGGAT 1648034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567932164960