Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq6 114 2e-23 >seq6 Length=557456 Score = 114 bits (126), Expect = 2e-23 Identities = 102/124 (82%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 47464 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 47521 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 47522 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTACTAATAAAGAT 47581 Query 119 TACC 122 |||| Sbjct 47582 TACC 47585 Score = 95.1 bits (104), Expect = 2e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 |||||||| | | |||| |||||| ||||||| ||| || ||||||||| ||||||||| Sbjct 47668 ACTCGTTGTACATATCATTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACAGA 47727 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 47728 CCTGTTGTTGCCTTAAACTTCCTTG 47752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751998193320