Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 5e-17 seq25 87.8 7e-15 >seq6 Length=557456 Score = 95.1 bits (104), Expect = 5e-17 Identities = 114/151 (75%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || | | | | || ||||| |||||||||| Sbjct 37123 GAGTCGTGTTCTTTGAGATTGGAGCACAAATACGTGTGATACATTTCACATAAAGCTAAA 37064 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | |||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 37063 TATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 37004 Query 158 AAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 || ||| | |||||||| || |||||| ||| Sbjct 37003 AATGAGCAATTAAAAAGTACCTGAAATCGTT 36973 Score = 80.6 bits (88), Expect = 1e-12 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||||||||||| || | |||||||| || ||||||| || ||| || ||| Sbjct 36287 TTGAGTAAGAGCATATTTGGTAGGACCCGAGAGGCTTTGAACTAAGCGTGACGAGATTGA 36228 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||| | ||| | | | ||| ||||||||||| || | | Sbjct 36227 AGTCAGACGAAAGTCTGATGGAAGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 36168 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 36167 GTCACGTTTAGGGGCGA 36151 >seq25 Length=326651 Score = 87.8 bits (96), Expect = 7e-15 Identities = 119/161 (74%), Gaps = 5/161 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGG--TAAATTTCTTCTAAAGCTAA 97 |||||| ||| |||| || || ||| | ||||| | | || ||||| ||||||||| Sbjct 40440 GAGTCGTGTTCTTTGAGATTGGAGCAC-AAATGCGTGTGATACATTTCACATAAAGCTAA 40382 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTG 156 |||| | |||||||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 40381 ATATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAG 40322 Query 157 GAAAGAG-AGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||| ||| ||||| || || |||||| ||| | | |||| Sbjct 40321 GAATGAGCCATTAAATAGTACCTGAAATCGTTAAGATGGAA 40281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079994680400