Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq106 291 1e-76 seq6 291 1e-76 seq25 111 3e-22 seq73 109 9e-22 >seq106 Length=47388 Score = 291 bits (322), Expect = 1e-76 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 46962 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 47021 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 47022 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 47081 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 47082 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 47141 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 47142 CTGTGGTAACTTTTCAGACACCTCTA 47167 >seq6 Length=557456 Score = 291 bits (322), Expect = 1e-76 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 33564 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 33623 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 33624 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 33683 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 33684 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 33743 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 33744 CTGTGGTAACTTTTCAGACACCTCTA 33769 >seq25 Length=326651 Score = 111 bits (122), Expect = 3e-22 Identities = 152/206 (74%), Gaps = 11/206 (5%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAA-CTAACCT-GTCTCATGACGGTCTAAACC--CAGCTCACGTTC 86 ||||||||||| ||||| ||| | |||||| ||| | | ||| |||||||||||| Sbjct 36724 TCATCAGTAGGTTAAAAACTAGGCAAGTCTCACGACTGCCCAAAAAATCAGCTCACGTTC 36783 Query 87 CCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 ||| |||| || |||||||||| || ||| || |||| | || |||||||||| | Sbjct 36784 CCTGTTAGCGGTTGAACAATCCGACACTTTGGGACTTCTTCATCCCAATGATAGGAAATG 36843 Query 147 CCGACAT----CGAAGGA-TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 | || || | || | ||||||||| ||||||||| |||| ||||||| |||| Sbjct 36844 CTGATATATTACAAAATAGTCAAAAAGCTACGTCGCTAAAGTCGCTCGGCTGCCGCAAGA 36903 Query 202 CAGTTATCCCTGTGGTAA--CTTTTC 225 |||||||||| | ||| |||||| Sbjct 36904 AAGTTATCCCTATTATAACCCTTTTC 36929 >seq73 Length=109035 Score = 109 bits (120), Expect = 9e-22 Identities = 146/196 (74%), Gaps = 19/196 (10%) Strand=Plus/Minus Query 51 ACCTGTCTCATGACGGTC--TAAAC-CCAG-CTCACGTTCCCTATTAGTGG-GTGAACAA 105 ||||||||||||| |||| |||| |||| | | |||||||| |||| | |||||||| Sbjct 26883 ACCTGTCTCATGAAGGTCCTTAAATTCCAGGCACTCGTTCCCTCTTAGCGCAGTGAACAA 26824 Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACAT-CGAAGGATCAA 164 ||| || ||| || |||| | || ||||||||||||||| | || | || ||||| Sbjct 26823 TCCGACACTTTGAGATTTCTTCATCTCAATGATAGGAAGAGCCTATATTCTAAAAATCAA 26764 Query 165 ----------AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 ||||| |||||||||| | ||||||| ||| |||||||||||||| ||| Sbjct 26763 TTAAAAAAAAAAAGCCACGTCGCTATAATCGCTTGGTAGCCGCAAGCCAGTTATCCTTGT 26704 Query 215 --GGTAA-CTTTTCTG 227 ||||| | |||||| Sbjct 26703 ACGGTAACCCTTTCTG 26688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854397881088