Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq6 109 1e-21 >seq6 Length=557456 Score = 109 bits (120), Expect = 1e-21 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| |||||||||| |||||||||||| |||| ||||||||||||||||||||| Sbjct 47564 TCGTGATGGGGATAGATTATTGCAATTATTAATCTTGAACGAGGAATGCCTAGTAAGCAT 47505 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||| | | ||| ||||||||||||||||||| Sbjct 47504 GATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGTA 47465 Score = 93.3 bits (102), Expect = 8e-17 Identities = 91/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 47782 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 47723 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||| ||||||||| || ||| ||||||| |||||| ||| | ||||||||| Sbjct 47722 GATGTCCTTAGATGAACTAGGCTGCACGCGTGCTACAATGATATGTACAACGAGTT 47667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947197650944