Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq6 462 7e-128 seq106 116 1e-23 seq25 109 2e-21 >seq6 Length=557456 Score = 462 bits (512), Expect = 7e-128 Identities = 319/363 (88%), Gaps = 11/363 (3%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-----------CGG 236 ||||||||| |||| ||| |||||||||||||| | ||| ||| | Sbjct 34104 TAAGTAAAACAACGTTAAAAGTAGTGGTATTTCATTGTCGCAAAAATCTTTCGATCTCTA 34163 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||||| Sbjct 34164 CTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTCAA 34223 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 34224 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 34283 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 34284 ATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 34343 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 34344 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTTGA 34403 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||||||| ||| |||||||||| ||||||||||||||||||||||| || || | || Sbjct 34404 TTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATACCA 34463 Query 537 CTT 539 || Sbjct 34464 GTT 34466 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 33881 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 33940 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 33941 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 33987 >seq106 Length=47388 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 47280 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 47339 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 47340 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 47386 >seq25 Length=326651 Score = 109 bits (120), Expect = 2e-21 Identities = 144/199 (72%), Gaps = 18/199 (9%) Strand=Plus/Plus Query 210 AGTGGTATTTCACTTGCGCCGAAACG--------------GCTCCCACTTATTCTACACC 255 |||||| |||||||||||| ||||| |||||||||||| |||||| Sbjct 37382 AGTGGTGTTTCACTTGCGCAGAAACATATTTCAGAATTCCGCTCCCACTTATGCTACACA 37441 Query 256 -TCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT--CCC 312 || ||| | ||| ||| || | || ||||| || |||| | |||||||| | ||| Sbjct 37442 ATCGGAAGCCTTTTTACAGAGCCTACCTGGAGTCGAGTTCAATAAGGTCTTCTGTGACCC 37501 Query 313 CGCTGATTCCGCCAAGCCCGT-TCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGAC 371 |||||| ||||||| || | |||||| |||||||||||||||| | | ||||||| Sbjct 37502 AACTGATTTAACCAAGCCTGTATTCCTTGGTTGTGGTTTCGCTAGATTGCAAGTAGGGAC 37561 Query 372 AGTGGGAATCTCGTTAATC 390 || ||||| ||||| ||| Sbjct 37562 AGCAGGAATTTCGTTTATC 37580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635195944704