Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq24 226 9e-57 seq6 217 4e-54 >seq24 Length=358120 Score = 226 bits (250), Expect = 9e-57 Identities = 187/224 (83%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| | ||| | ||| ||||| ||||| ||||||||||||| | Sbjct 899 TCATTCCAATTACAA-AGCCAGATTGGCCTTGTATTGTTATTTCTTGTCACTACCTCTCT 957 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | |||||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 958 TCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTC 1017 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGC 183 ||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| ||||| Sbjct 1018 AGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGGC 1076 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 || || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 1077 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 1120 Score = 127 bits (140), Expect = 6e-27 Identities = 127/163 (78%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | || || | | |||| || | Sbjct 1245 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAT--AGAAAATGTCAAGTAGA 1302 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 1303 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 1362 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1363 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 1405 >seq6 Length=557456 Score = 217 bits (240), Expect = 4e-54 Identities = 184/224 (82%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| ||| | | ||||| ||||| ||||||||||||| | Sbjct 48962 TCATTCCAATTACAAAACCAGTTTTGGTCTTGTATTGTTATTTCTTGTCACTACCTCTCT 49021 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | |||||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 49022 TCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTC 49081 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGC 183 ||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| ||||| Sbjct 49082 AGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGGC 49140 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 || || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 49141 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 49184 Score = 127 bits (140), Expect = 6e-27 Identities = 127/163 (78%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | || || | | |||| || | Sbjct 49309 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAT--AGAAAATGTCAAGTAGA 49366 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 49367 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 49426 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 49427 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 49469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510396254208