Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20fragile_20[genbank_20GCA_5F000956335.1_202015-03-20] 248 sequences; 25,914,542 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq11 113 4e-20 >seq11 Length=477202 Score = 113 bits (124), Expect = 4e-20 Identities = 352/545 (65%), Gaps = 0/545 (0%) Strand=Plus/Minus Query 66023 TTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTG 66082 || || ||||| | || ||||||| ||||| || | ||| || |||| ||||| Sbjct 52070 TTACACACAGCCACTTCATCAGGAGATGTATATTCAATAATCTCACAACACAAGTTACTA 52011 Query 66083 CAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATC 66142 || ||||| |||| ||||| ||||| || ||| || | |||||| |||| | Sbjct 52010 CATTTGATGGTACCCAGATTCTTCTGATTCGATTTAGCATTACAAGAATCCTTATACAAC 51951 Query 66143 ATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCC 66202 ||||| ||| || || || | ||| | | ||||| ||| | | | ||||| Sbjct 51950 ATGTAAGGAACACCAGTTTCTATTTGACTTTGTAAAATGGCAAACCATAAATCTTGTGCC 51891 Query 66203 TTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGAT 66262 |||||| | | || || || ||| || | | |||||| | |||||| | Sbjct 51890 AGCACCGTTTTTTTCCCCATATTTTCTTCTTCATATTTTAAGTAGAGTTTTTCGAATTCT 51831 Query 66263 TCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCA 66322 || |||||| || | | |||||| | | ||| ||||| || | ||||| | Sbjct 51830 TCTCCCCATGACTCACTTAACCCTGGACATTCATTTGGGCACATGAGAGTCCAATTTTGA 51771 Query 66323 TCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGT 66382 | | | || | |||||| | ||||||| ||| | || || || ||||| || Sbjct 51770 TTTTCCTTCACTCTCTTCATAAACAAGTCAGGTACCCACACAGCATAAAAAAGATCTCGA 51711 Query 66383 GCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCA 66442 ||||| | || || | || |||||||| | || || | || ||||| ||||| | | Sbjct 51710 GCTCGAAGTTCTTCCTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATGTCTGAA 51651 Query 66443 TGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACG 66502 ||||||||||| | || | || || || ||| | | || || || ||||| || || Sbjct 51650 TGCCATGGTTCAATATAAACTGCAAAAGACCCCTTTCTCTTTCCTCCTCCTTGATCCACA 51591 Query 66503 TAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTG 66562 || | ||| || || || || | | ||| ||||| ||||| || ||| | ||||| Sbjct 51590 TACCTAGCTGTATCATTAAATACCCTAAGCATTGGTACTAGCCCATTGGATATTCCATTT 51531 Query 66563 GTGCC 66567 || || Sbjct 51530 GTTCC 51526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566798350720