Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq8261 122 2e-25 seq22237 105 2e-20 seq8 93.3 1e-16 >seq8261 Length=657 Score = 122 bits (134), Expect = 2e-25 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 355 GTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCT 414 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 GTTACGGTGCCATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCT 60 Query 415 CTACCCAACCAC 426 |||||||||||| Sbjct 61 CTACCCAACCAC 72 >seq22237 Length=330 Score = 105 bits (116), Expect = 2e-20 Identities = 58/58 (100%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACA 58 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 58 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACA 1 >seq8 Length=4933 Score = 93.3 bits (102), Expect = 1e-16 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| || ||| |||||| |||| |||||||||||||||||| ||||||||||||| Sbjct 41 TCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAGGAC 100 Query 128 CGTTATTGTTACGGCCGCCGTTTA 151 |||| ||| ||||||||||| Sbjct 101 CGTTTAAAATACAGCCGCCGTTTA 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260475268352