Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F000576715.1_202014-02-03] 25,756 sequences; 16,303,117 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq15732 235 2e-59 >seq15732 Length=427 Score = 235 bits (260), Expect = 2e-59 Identities = 234/305 (77%), Gaps = 26/305 (9%) Strand=Plus/Minus Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| ||||| | |||| |||||||||||||||||||| ||||||||||||||||| Sbjct 426 CTGAGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAG 367 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||||||| ||||||||| |||||||||| |||| | |||||||| | || || Sbjct 366 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTGTGAAGA 307 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGT---CCTCAAGGAAG------------ATA------ 378 ||| |||||| | ||||||| || | |||||| ||| Sbjct 306 AGGTCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGGCAGTTACCTAATACGTGAT 247 Query 379 ----ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAT 434 ||||| ||| || |||| |||||||||| |||||||||||||||||||| Sbjct 246 TGTTTTGACGTTACCGACAGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAAT 187 Query 435 ACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCT 494 || |||| || ||||||| |||||||||| |||||||||| | |||||||||||| | Sbjct 186 ACAGAGGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCGCGTAGGTGGTTAGT 128 Query 495 TAAGT 499 ||||| Sbjct 127 TAAGT 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497214278144