Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq12 95.1 5e-17 >seq12 Length=1108057 Score = 95.1 bits (104), Expect = 5e-17 Identities = 120/161 (75%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAA 97 ||||||| | | |||| || || ||| |||| | | | | || ||||| ||||||||| Sbjct 831958 CGAGTCGTGCTCTTTGAGATTGGAGCACTAATACGTGTGATACATTTCACATAAAGCTAA 832017 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTG 156 |||| | |||||||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 832018 ATATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAG 832077 Query 157 GAAAGAG-AGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||| ||| | ||||| || || |||||| ||| | | |||| Sbjct 832078 GAATGAGCAATTAAATAGTACCTGAAATCGTTAAGATGGAA 832118 Score = 89.7 bits (98), Expect = 2e-15 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 545 ATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGT 604 ||||||||||||||||| |||| |||||||| || ||||||| || ||| || | Sbjct 832638 ATTTGAGTAAGAGCATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGATGAGATT 832697 Query 605 GAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA 664 |||| |||| |||| |||| |||||| ||| | | ||| ||||||||||| || | Sbjct 832698 GAAGTCAGACGAAAGTCTGATGGAGGATCGAGTTGATACTGACGTGCAAATCGTTCATTT 832757 Query 665 AATTTGGGTATAGGGGCGA 683 | | || ||||||||| Sbjct 832758 CAATCACGTTTAGGGGCGA 832776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079982132150