Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq558 293 4e-77 seq12 291 1e-76 seq562 87.8 3e-15 >seq558 Length=1873 Score = 293 bits (324), Expect = 4e-77 Identities = 235/283 (83%), Gaps = 19/283 (7%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1843 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 1784 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 1783 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 1724 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 1723 CATCGAAGGATCAAAAAGCTACGTCGCTAAGAGCGCTTGGCAGCCACAAGCCAGTTATCC 1664 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA---GC---CTCA-AATTTCGAGGGAC-------- 255 ||||||||||||||| | |||||||| || ||| |||||| || Sbjct 1663 CTGTGGTAACTTTTCAGACACCTCTACATGCACAATCAGAATTTCTTAATACATTTTGCA 1604 Query 256 ----TAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||||||||||||||||| |||||| | ||| || ||| Sbjct 1603 AATATAAAGGATCGATAGGCCACGCTTTCACGTTTTCTACTCA 1561 >seq12 Length=1108057 Score = 291 bits (322), Expect = 1e-76 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 835099 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 835040 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 835039 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 834980 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 834979 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 834920 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 834919 CTGTGGTAACTTTTCAGACACCTCTA 834894 >seq562 Length=344 Score = 87.8 bits (96), Expect = 3e-15 Identities = 97/129 (75%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 75 CAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTA 134 |||||| |||||||| ||| || |||||||||| || ||| || |||| |||| | Sbjct 303 CAGCTCTCGTTCCCTTTTAACGGTTGAACAATCCGACACTTTGAGATTTCTTCTTCTCAA 244 Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAA---CGCTTGGC 191 |||||||||||||| | || ||||| |||| ||||||||| || |||| ||| Sbjct 243 TGATAGGAAGAGCCAAAATTTTCAAATCAATAAGCTACGTCGCTAAAAATATCGCTCGGC 184 Query 192 TGCCACAAG 200 |||||||| Sbjct 183 AGCCACAAG 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854392882848