Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gaboni_20[genbank_20GCA_5F001602025.1_202016-04-08] 833 sequences; 20,385,537 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq12 462 7e-128 seq558 379 7e-103 >seq12 Length=1108057 Score = 462 bits (512), Expect = 7e-128 Identities = 448/578 (78%), Gaps = 46/578 (8%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| |||||||| Sbjct 834783 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTAAA 834724 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||| ||||||||| ||||||||||||||| | ||||| || | || Sbjct 834723 TTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC-TCCATAGAAATG 834665 Query 127 GGCCC----GCGAAGGACCTT-------AACGCCAG-------AAAATG-------GTCG 161 || | ||| | || || | | |||||| | | Sbjct 834664 GGAGAAAAAGAGAAATAAATTTCTCAAAAATTCAAATAATATTAAAATGCCAACCCGAAG 834605 Query 162 G-TGAAGACC------AGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGG 214 | | ||||| | |||| | | || ||||||||| ||| ||| ||||||| Sbjct 834604 GATAAAGACATAATATATTTCCCTGTAAATGGATAAGTAAAACAACTTTAAAAGTAGTGG 834545 Query 215 TATTTCACTTGCGCCGAAACGG-------------CTCCCACTTATTCTACACCTCTCAA 261 ||||||||| || |||| ||||||||||| |||||||||| || Sbjct 834544 TATTTCACTGTCGTAAAAACATATTTCAGTTTCTACTCCCACTTATGCTACACCTCTTAA 834485 Query 262 GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTC 321 ||| |||||||||| | ||||||||| |||||||||||||||||||||||||||||||| Sbjct 834484 GTCGTTTCACAAAGCCAGACTAGAGTAAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTT 834425 Query 322 CGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATC 381 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 834424 TGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATC 834365 Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 834364 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 834305 Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501 |||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||||||| Sbjct 834304 AGTCATAGTTACTCCCGCCGTTTACCTGCGCTTGATTGAATTTCATCAAGTTGACATTCA 834245 Query 502 GAGCACTGGGCAGAAATCACATTGCGTCAACATCACTT 539 ||||||||||||||||||||||| || || | || || Sbjct 834244 AAGCACTGGGCAGAAATCACATTGTGTTAATACCAGTT 834207 >seq558 Length=1873 Score = 379 bits (420), Expect = 7e-103 Identities = 312/377 (83%), Gaps = 21/377 (6%) Strand=Plus/Minus Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG----- 236 || ||||| |||||| ||| ||| |||||||||||||||| || ||| | Sbjct 1284 ATGGATTA-GTAAAACAACTTTAAAAGTAGTGGTATTTCACTGACGTAAAAAACGTATTT 1226 Query 237 ----------CTCCCACTTAT-TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 285 ||||||||||| ||||||||| | ||||| |||||||||| | ||||||| Sbjct 1225 CATTTTCTTACTCCCACTTATATCTACACCTTTTAAGTCGTTTCACAAAGCCAGACTAGA 1166 Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1165 GTAAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGT 1106 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 ||||||||||||||| | ||||||||||||||||||||||||||||||| || ||| Sbjct 1105 GGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCCTGATGGTC- 1047 Query 406 CTAATTAGATGACGAGGCA-TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 464 ||||||||||||| | || |||||||||||||||||||||||||||||||||||||||| Sbjct 1046 CTAATTAGATGACCATACATTTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 987 Query 465 ACCCGCGCTTGGTTGAA--TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 ||| |||||| ||||| |||| ||| || ||||||| |||||||||||||||||||| Sbjct 986 ACCTGCGCTTAATTGAATTTTTCATCAACTTCACATTCAAAGCACTGGGCAGAAATCACA 927 Query 523 TTGCGTCAACATCACTT 539 ||| || || | || || Sbjct 926 TTGTGTTAATACCAGTT 910 Score = 104 bits (114), Expect = 8e-20 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| ||| ||| ||||| ||| ||||| Sbjct 1528 CTTTTAGTCTACATGAGATTTCTGTTCTCATTGAACTTGTCTTTGGACATCTGTGTTATT 1469 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||||||||| ||||||||| |||||||||||||| || ||||| Sbjct 1468 TTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTAACTATGTC 1422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635186378784