Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 5e-17 seq8 80.6 1e-12 >seq3 Length=1051854 Score = 95.1 bits (104), Expect = 5e-17 Identities = 114/151 (75%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | || ||| | | || ||||| |||||||||| Sbjct 980968 GAGTCGTGTTCTTTGAGATTGGAGCACAAATATGTGTGATACATTTCACATAAAGCTAAA 981027 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | |||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 981028 TATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 981087 Query 158 AAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 || ||| | ||||| || || |||||| ||| Sbjct 981088 AATGAGCAATTAAATAGTACCTGAAATCGTT 981118 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||||| | || | |||||||| || ||||||| || ||| || ||| Sbjct 981619 TTGAGTATGAGCACATTTGGTAGGACCCGAGAGGCTTTGAACTAAGCGTGATGAGATTGA 981678 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 981679 AGTCAGACGAAAGTCTGATGGAGGATCGAACTGATACTGACGTGCAAATCGTTCATTTCA 981738 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 981739 ATCACGTTTAGGGGCGA 981755 >seq8 Length=1849747 Score = 80.6 bits (88), Expect = 1e-12 Identities = 113/154 (73%), Gaps = 6/154 (4%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTC---TAAAGCT 95 |||||| ||| |||| | || ||| |||| | | | | |||| | ||| ||||||| Sbjct 76494 GAGTCGTGTTCTTTGAAACTGGAGCACTAATACGTGTGATAAACATTTTCACATAAAGCT 76435 Query 96 AAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTT 154 |||||| | |||||||||||| ||||||| |||| ||||||||||| || ||| Sbjct 76434 AAATATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTC 76375 Query 155 TGGAAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 |||| ||| ||||| || || |||||| ||| Sbjct 76374 AGGAATGAGCCATTAAATAGTACCTGAAATCGTT 76341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079984062650