Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq743 147 5e-33 seq742 95.1 3e-17 >seq743 Length=34515 Score = 147 bits (162), Expect = 5e-33 Identities = 253/364 (70%), Gaps = 15/364 (4%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||| || |||| || |||||| || ||||| Sbjct 4268 GCATCTTCACAGATAATTTTATTTCATTAAGATTATTTTTAAGACAGCATTTAAGTCGTT 4209 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4208 ACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTA 4149 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTA----ACAG 182 ||| ||| ||||||||||||| |||| | | | || | | | || | | Sbjct 4148 TAGATACAGCCGCCGTTTACTATAGCTT-ATATAATATATTATAATTTTATATTATATAT 4090 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 || || || | ||||| |||||| |||| |||||||| | || | | ||| Sbjct 4089 ATTATTTTTACATAATAGCACTGGGCAGATGTCAATCTTTATACATCATTTTTCAATTTA 4030 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCA--T 300 ||| | | |||||||||| ||||||||||||| ||| | | | | | | Sbjct 4029 GCAAAGATTTGTGTTTTTGTTAAACAGTCGCTT----AAATTTTTT----ATTATAAACT 3978 Query 301 AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGT 360 | | | | | | || |||||||||||| | | ||||||||||||||||||| || | | Sbjct 3977 AAATAAGTATCTTTTATCCCTAAGTTACAAGATAATTTTGCCGAGTTCCTTAAAAAAAAT 3918 Query 361 TCTC 364 | || Sbjct 3917 TATC 3914 Score = 147 bits (162), Expect = 5e-33 Identities = 253/364 (70%), Gaps = 15/364 (4%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||| || |||| || |||||| || ||||| Sbjct 30240 GCATCTTCACAGATAATTTTATTTCATTAAGATTATTTTTAAGACAGCATTTAAGTCGTT 30299 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 30300 ACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTA 30359 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTA----ACAG 182 ||| ||| ||||||||||||| |||| | | | || | | | || | | Sbjct 30360 TAGATACAGCCGCCGTTTACTATAGCTT-ATATAATATATTATAATTTTATATTATATAT 30418 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 || || || | ||||| |||||| |||| |||||||| | || | | ||| Sbjct 30419 ATTATTTTTACATAATAGCACTGGGCAGATGTCAATCTTTATACATCATTTTTCAATTTA 30478 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCA--T 300 ||| | | |||||||||| ||||||||||||| ||| | | | | | | Sbjct 30479 GCAAAGATTTGTGTTTTTGTTAAACAGTCGCTT----AAATTTTTT----ATTATAAACT 30530 Query 301 AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGT 360 | | | | | | || |||||||||||| | | ||||||||||||||||||| || | | Sbjct 30531 AAATAAGTATCTTTTATCCCTAAGTTACAAGATAATTTTGCCGAGTTCCTTAAAAAAAAT 30590 Query 361 TCTC 364 | || Sbjct 30591 TATC 30594 >seq742 Length=5999 Score = 95.1 bits (104), Expect = 3e-17 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || |||| |||||||||||||||||| |||||||||| Sbjct 518 AAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAG 577 Query 119 GACCGTTATAGTTACGGCCGCCGTTTA 145 ||||||| | ||| ||||||||||| Sbjct 578 GACCGTTTACGATACAGCCGCCGTTTA 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062392106368