Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3 291 1e-76 seq8 123 4e-26 seq1 78.8 2e-12 >seq3 Length=1051854 Score = 291 bits (322), Expect = 1e-76 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 984263 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 984204 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 984203 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 984144 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 984143 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 984084 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 984083 CTGTGGTAACTTTTCAGACACCTCTA 984058 >seq8 Length=1849747 Score = 123 bits (136), Expect = 4e-26 Identities = 149/198 (75%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTA-ACCTGTCTCATGACGGTC-TAAACCCAGCTCACGTTCCC 88 ||||||||||| |||||||| || |||||| ||| ||| |||| |||| ||||||||| Sbjct 72412 TCATCAGTAGGTTAAAACTAGACTTGTCTCGTGAAAGTCCTAAATTCAGCACACGTTCCC 72471 Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC- 147 |||||| || |||||||||| || ||| || |||| |||| |||||||||| || Sbjct 72472 TATTAGCGG-TGAACAATCCGACACTTTGAGATTTCTTCTTCTCAATGATAGGAAATGCT 72530 Query 148 -CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 || || |||||||||| ||||||||| | ||| ||| ||| |||| ||| Sbjct 72531 ATATAATAAAATAATCAAAAAGCCACGTCGCTAAAATTGCTCGGCAGCCGCAAGATTGTT 72590 Query 207 ATCCCTGTGGTAACTTTT 224 |||||| | ||||| || Sbjct 72591 ATCCCTATCATAACTCTT 72608 >seq1 Length=977776 Score = 78.8 bits (86), Expect = 2e-12 Identities = 112/153 (73%), Gaps = 5/153 (3%) Strand=Plus/Minus Query 78 CTCACGTTCCCTATTAGT--GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTAT 135 |||||||||||| ||| | ||||||||||| || ||| || |||| | || || Sbjct 918221 CTCACGTTCCCTTTTAAACAGAGTGAACAATCCGACACTTTGAGACTTCTTCGTCCCAAT 918162 Query 136 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT-ATGAACGCTTGGCTGC 194 ||||||||||| | | | | | |||| ||||| |||| || | ||| | ||| || Sbjct 918161 GATAGGAAGAGTCTAAAAC-ATTTATCACAAAGCTACGTTACTAAATCACGTTCGGCAGC 918103 Query 195 CACAAGCCAGTTATC-CCTGTGGTAACTTTTCT 226 |||||| |||||||| ||||| ||||| |||| Sbjct 918102 CACAAGACAGTTATCTTCTGTGCTAACTCTTCT 918070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854393651808