Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq743 102 9e-20 seq742 82.4 8e-14 >seq743 Length=34515 Score = 102 bits (112), Expect = 9e-20 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 49 AATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNNNNN 108 |||| |||||||||| |||| | |||||| | || | | || |||||| Sbjct 4273 AATCTGCATCTTCACAGATAATTTTATTTCATTAAGATTATTTTTAAGACAGCATTTAAG 4214 Query 109 NNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 168 |||| | ||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 4213 TCGTTACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGAC 4154 Query 169 CGTTA 173 ||||| Sbjct 4153 CGTTA 4149 Score = 102 bits (112), Expect = 9e-20 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 49 AATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNNNNN 108 |||| |||||||||| |||| | |||||| | || | | || |||||| Sbjct 30235 AATCTGCATCTTCACAGATAATTTTATTTCATTAAGATTATTTTTAAGACAGCATTTAAG 30294 Query 109 NNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 168 |||| | ||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 30295 TCGTTACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGAC 30354 Query 169 CGTTA 173 ||||| Sbjct 30355 CGTTA 30359 >seq742 Length=5999 Score = 82.4 bits (90), Expect = 8e-14 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| ||| |||||| |||| |||||||||||||||||| ||||||||||||||||| Sbjct 525 TACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAGGACCGTT 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547196061357