Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3 453 4e-125 seq8 98.7 3e-18 >seq3 Length=1051854 Score = 453 bits (502), Expect = 4e-125 Identities = 318/365 (87%), Gaps = 13/365 (4%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG----------- 236 ||||||||| ||| ||| |||||||||||||||| || |||| Sbjct 983731 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGTAAAAACATATTTCAGTTTC 983672 Query 237 --CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 983671 TACTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTC 983612 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 983611 AACAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 983552 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 983551 AGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 983492 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 983491 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTT 983432 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 | ||||||||| ||| |||||||||| ||||||||||||||||||||||| || || | Sbjct 983431 GATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATAC 983372 Query 535 CACTT 539 || || Sbjct 983371 CAGTT 983367 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 983946 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 983887 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 983886 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 983840 >seq8 Length=1849747 Score = 98.7 bits (108), Expect = 3e-18 Identities = 118/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||||||||| |||||| |||| || |||||| | |||||||||||| ||| Sbjct 73058 GCTCCCACTTATGCTACACAATCGGAGTCGGTTTACAAAGCCAAACTAGAGTCAAGTTCA 73117 Query 296 ACAGGGTCTTCTTT--CCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 | |||||| ||| | || |||||| ||||| | || ||||| |||||||||| Sbjct 73118 ATAGGGTCATCTGTGACCTAACTGATTTTACCAAG-ACTATCACTTGGTTGTGGTTTCGA 73176 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATC 390 ||||| | | |||||||||| ||||| | ||||||| Sbjct 73177 TAGATTGCAAGTAGGGACAGTAGGAATAT-GTTAATC 73212 Score = 80.6 bits (88), Expect = 9e-13 Identities = 89/114 (78%), Gaps = 6/114 (5%) Strand=Plus/Plus Query 423 CATTTGGCTACCTTAAGAGAGTCATAGT---TACTCCCGCCGTTTACCCGCGC-TTGGTT 478 |||||||| | || | |||||||||| |||||||||| |||||| | || || || Sbjct 73419 CATTTGGCCAATTTTA-AGAGTCATAGCAACTACTCCCGCCATTTACCTGTGCATTTATT 73477 Query 479 GAATTTCTTCACTTTGACATTCAGAG-CACTGGGCAGAAATCACATTGCGTCAA 531 ||||| |||| ||| ||||| | ||||||||||||||||||||| ||||| Sbjct 73478 GAATTGCTTCTAATTGTTATTCAAAAACACTGGGCAGAAATCACATTGTGTCAA 73531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635187850464