Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20gonderi_20[genbank_20GCA_5F002157705.1_202017-05-17] 743 sequences; 33,006,272 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq10 226 9e-57 seq3 226 9e-57 seq5 203 1e-49 >seq10 Length=1488461 Score = 226 bits (250), Expect = 9e-57 Identities = 187/224 (83%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| | ||| | ||| ||||| ||||| ||||||||||||| | Sbjct 518 TCATTCCAATTACAA-AGCCAGATTGGCCTTGTATTGTTATTTCTTGTCACTACCTCTCT 576 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | |||||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 577 TCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTC 636 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGC 183 ||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| ||||| Sbjct 637 AGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGGC 695 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 || || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 696 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 739 Score = 134 bits (148), Expect = 4e-29 Identities = 129/163 (79%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | |||||| | | |||| || | Sbjct 863 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAGTAAAAAA-TGTCAAGTAGA 921 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 922 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 981 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 982 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 1024 >seq3 Length=1051854 Score = 226 bits (250), Expect = 9e-57 Identities = 187/224 (83%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||||| | ||| | ||| ||||| ||||| ||||||||||||| | Sbjct 971423 TCATTCCAATTACAA-AGCCAGATTGGCCTTGTATTGTTATTTCTTGTCACTACCTCTCT 971365 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | |||||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 971364 TCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTC 971305 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGC 183 ||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| ||||| Sbjct 971304 AGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGGC 971246 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 || || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 971245 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 971202 Score = 134 bits (148), Expect = 4e-29 Identities = 129/163 (79%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | |||||| | | |||| || | Sbjct 971078 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAGTAAAAAA-TGTCAAGTAGA 971020 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 971019 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 970960 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 970959 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 970917 >seq5 Length=1204002 Score = 203 bits (224), Expect = 1e-49 Identities = 175/217 (81%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 11 CAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCG 70 ||||||||| ||| | | | ||||| ||||| ||||||||||||| | | Sbjct 1 CAATTACAAAACCAGATTTGGTCTTGTATTGTTATTTCTTGTCACTACCTCTCTTCATTA 60 Query 71 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC 130 | |||||||||||| ||||||||||||| ||||| ||||| ||||| |||||||||||| Sbjct 61 GAATTGGGTAATTTACGCGCCTGCTGCCATCCTTAGATGTAGTAGCTATTTCTCAGGCTC 120 Query 131 CCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATC 190 ||||||||||||||||| ||||||||||||||||||| | ||||| ||||||| || | Sbjct 121 CCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCGTCATTGCCATGTTAGGCCAATACC 180 Query 191 CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| |||| |||| ||||||| |||||| | || ||| Sbjct 181 CTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 217 Score = 132 bits (146), Expect = 1e-28 Identities = 128/164 (78%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | || ||| | | |||| || | Sbjct 340 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATATTAAAAAAATGTCAAGTAGA 399 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTC---ACTGTATAGATTGCTTATACTTAG 459 ||||||| ||||||||||| ||||||||||| | |||| ||| ||||||| Sbjct 400 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTGCATATTATAATATGCATATACTTTC 459 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 460 ACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510388777728