Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq23 129 9e-28 seq21 127 3e-27 seq26 125 1e-26 >seq23 Length=1360573 Score = 129 bits (142), Expect = 9e-28 Identities = 190/272 (70%), Gaps = 43/272 (16%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 108634 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 108691 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 108692 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTATTGATAAAGAT 108751 Query 119 TACCCGGACCTGTC------GGCCAAG----------------------------GTGA- 143 |||| || | || || ||| || | Sbjct 108752 TACCTACACTTTTCAGTGGAGGAAAAGTACGAAATAAACTGCAAGCAGCCATATCGTAAT 108811 Query 144 --TAG--ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCA 199 ||| ||||||| | | ||||||||||| ||||||| ||| || ||||||||| || Sbjct 108812 TTTAGTAACTCGTTATACATATCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACA 108871 Query 200 TCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 ||||||||||||| |||||| |||||||| || Sbjct 108872 TCACAGACCTGTTGTTGCCTTAAACTTCCTTG 108903 >seq21 Length=1079809 Score = 127 bits (140), Expect = 3e-27 Identities = 190/273 (70%), Gaps = 44/273 (16%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 979987 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 979930 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 979929 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTATTGATAAAGAT 979870 Query 119 TACCCGGACCTGTC------GGCCAAG-----------------------------GTGA 143 |||| || | || || ||| || | Sbjct 979869 TACCTACACTTTTCAGTGGAGGAAAAGTACGAAATAAACTGCAAGCAGCTAAAATCGTAA 979810 Query 144 ---TAG--ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGC 198 ||| ||||||| | | ||||||||||| ||||||| ||| || ||||||||| | Sbjct 979809 TTTTAGTAACTCGTTATACATATCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGAC 979750 Query 199 ATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 |||||||||||||| |||||| |||||||| || Sbjct 979749 ATCACAGACCTGTTGTTGCCTTAAACTTCCTTG 979717 >seq26 Length=1556943 Score = 125 bits (138), Expect = 1e-26 Identities = 190/274 (69%), Gaps = 45/274 (16%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 91859 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 91916 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 91917 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTATTGATAAAGAT 91976 Query 119 TACCCGGACCTGTC------GGCCAAG------------------------------GTG 142 |||| || | || || ||| || Sbjct 91977 TACCTACACTTTTCAGTGGAGGAAAAGTACGAAAATAAACTGCAAGCAGCTAAAATCGTA 92036 Query 143 A---TAG--ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGG 197 | ||| ||||||| | | ||||||||||| ||||||| ||| || ||||||||| Sbjct 92037 ATTTTAGTAACTCGTTATACATATCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGA 92096 Query 198 CATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 ||||||||||||||| |||||| |||||||| || Sbjct 92097 CATCACAGACCTGTTGTTGCCTTAAACTTCCTTG 92130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999796020